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BioLiP
>protein
SDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDD
WSNLGSISELSTSRVGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHLVRA
SIDLGSGSIQLTQSKWNEPVNVD

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2byo:A 183 183 1.0000 1.0000 1.0000 1.44e-131
2 4zra:A 196 195 0.3169 0.2959 0.2974 2.02e-18 3mha:A
3 4qa8:A 210 197 0.3169 0.2762 0.2944 3.00e-11
4 6tqn:A 495 34 0.0929 0.0343 0.5000 0.91 6gov:A, 5lm7:A, 5lm7:C, 5lm9:A, 5ms0:M, 6tqo:A, 1u9l:A, 1u9l:B, 7ubn:N, 6xas:G
5 7vc7:A 743 109 0.1749 0.0431 0.2936 1.9
6 4b28:A 437 23 0.0601 0.0252 0.4783 4.1
7 7bye:F 98 29 0.0874 0.1633 0.5517 8.2
8 7bye:B 108 29 0.0874 0.1481 0.5517 8.9 7bye:C, 7bye:E
9 8x2h:A 2363 41 0.0820 0.0063 0.3659 8.9 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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