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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDFVRKLYKMLEDPSYHSVVRWSDDGDSFVVLENEKFTKTILPKHFKHSNFASFVRQLNKYDFHKVRHNDEPYGRDAWEF
KHPEFRADRKDNLDNIRRK

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5d5x:B 99 99 1.0000 1.0000 1.0000 7.69e-70 5d5w:B, 5d5x:E
2 5d8k:B 106 101 0.4646 0.4340 0.4554 3.79e-26 5d8l:B, 5d8l:D, 5d8l:F, 5d8l:H, 7dcu:B
3 7dcu:A 101 97 0.4646 0.4554 0.4742 2.75e-25 7dci:A, 7dcu:C
4 7dcj:B 110 98 0.4343 0.3909 0.4388 4.11e-24 5d5u:B, 5d5v:B, 5d5v:D, 7dcj:A, 7dcs:A, 7dcs:B, 7dcs:C, 7dcs:D, 7dcs:E, 7dcs:F, 7dct:A, 7dct:B, 7dct:C, 7dct:D, 7dct:E, 7dct:F, 5hdn:A, 5hdn:C
5 1fyk:A 88 80 0.3939 0.4432 0.4875 2.22e-21 3hts:B
6 1pz0:A 311 61 0.2222 0.0707 0.3607 0.64
7 8vz8:A 266 97 0.2121 0.0789 0.2165 3.5 8vz9:A
8 2y7l:A 312 35 0.1212 0.0385 0.3429 4.4
9 5jb3:O 148 20 0.0808 0.0541 0.4000 6.9 5jbh:O, 6sw9:O, 6swc:O, 6swe:O, 4v4n:BO, 4v6u:AO, 7zag:O, 7zah:O, 7zai:O, 7zhg:O
10 2etw:A 297 49 0.1616 0.0539 0.3265 7.5 2euv:A, 2euw:A, 2eux:A, 2euz:A, 2evf:A, 2evg:A, 2evh:A, 2evi:A, 2evj:A, 1mnn:A
11 3jsk:A 292 52 0.1818 0.0616 0.3462 8.3 3jsk:B, 3jsk:C, 3jsk:D, 3jsk:E, 3jsk:F, 3jsk:G, 3jsk:H, 3jsk:I, 3jsk:J, 3jsk:K, 3jsk:L, 3jsk:M, 3jsk:N, 3jsk:O, 3jsk:P
12 3q6k:B 381 20 0.0808 0.0210 0.4000 9.3 3q6k:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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