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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDEVRKNLMDMFRARQVFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLH
RRSGLPRPSDSNAVSLVMRRIRKENVDAGERAKQALAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLRIAEIAR
IRVKDISRTDGGAMLIHIGGVEKALSLGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEAT
HRLIYGAKDDSGQRYLAWSGHSARVGAARDMARAGVSIPEIMQAGGWTNVNIVMNYIRNLD

The query sequence (length=301) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1nzb:A 332 310 0.9900 0.8976 0.9613 0.0 3c28:B, 3c29:A, 3c29:B, 3c29:G, 3c29:H, 1crx:B, 1crx:A, 2crx:B, 2crx:A, 3crx:B, 3crx:A, 4crx:A, 4crx:B, 5crx:A, 5crx:B, 1drg:A, 1f44:A, 2hof:A, 2hof:B, 2hoi:A, 2hoi:B, 2hoi:G, 2hoi:H, 1kbu:B, 1kbu:A, 1ma7:A, 1ma7:B, 3mgv:B, 3mgv:A, 3mgv:D, 3mgv:C, 1nzb:B, 1nzb:E, 1nzb:F, 1ouq:B, 1ouq:A, 1ouq:F, 1ouq:E, 1pvp:B, 1pvp:A, 1pvq:B, 1pvq:A, 1pvr:B, 1pvr:A, 1q3u:A, 1q3u:B, 1q3u:E, 1q3u:F, 1q3v:B, 1q3v:A, 1q3v:F, 1q3v:E, 7rhx:A, 7rhx:B, 7rhx:G, 7rhx:H, 7rhy:A, 7rhz:A, 7rhz:B, 5u91:A, 5u91:B, 5u91:E, 5u91:F, 1xns:A, 1xns:B, 1xo0:B, 1xo0:A
2 3c28:A 299 301 0.9468 0.9532 0.9468 0.0
3 2a3v:B 320 128 0.1296 0.1219 0.3047 2.1 2a3v:A, 2a3v:C, 2a3v:D
4 1n67:A 332 93 0.0664 0.0602 0.2151 4.7 2vr3:A, 2vr3:B
5 3e80:C 747 49 0.0532 0.0214 0.3265 6.0 3e7j:A, 3e7j:B, 3e80:A, 3e80:B, 2fuq:B, 2fuq:A, 2fut:A, 2fut:B
6 5e3x:A 489 49 0.0631 0.0389 0.3878 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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