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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARER
DAYKVKSEKLANSG

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2wty:B 97 94 1.0000 0.9691 1.0000 4.39e-64 4auw:A, 4auw:B, 4auw:E, 4auw:F, 2wt7:B, 2wty:A
2 4eot:A 92 90 0.7872 0.8043 0.8222 3.53e-46 4eot:B
3 7x5e:E 101 90 0.5532 0.5149 0.5778 2.70e-31 3a5t:A, 3a5t:B, 7x5e:A, 7x5f:A, 7x5f:E, 7x5g:A, 7x5g:E
4 4par:C 314 92 0.2234 0.0669 0.2283 0.96 4par:B, 4par:A, 4par:D, 4pba:C, 4pba:B, 4pba:A, 4pba:D
5 6evq:A 70 27 0.1383 0.1857 0.4815 1.1 6evq:B, 3gjo:A, 3gjo:B, 3gjo:C, 3gjo:D, 5n74:A, 5n74:B, 5n74:C, 5n74:D, 5n74:E, 5n74:F, 5n74:G, 5n74:H, 7olg:A, 7olg:B
6 7x5e:B 106 80 0.2021 0.1792 0.2375 1.7 7x5e:F, 7x5f:B, 7x5f:F, 7x5g:B, 7x5g:F
7 5vpe:D 67 61 0.2128 0.2985 0.3279 2.6 5vpe:B, 5vpf:B, 5vpf:D
8 4oht:A 455 38 0.1489 0.0308 0.3684 4.1 4oht:B, 4ywu:A, 4ywu:B, 4ywv:A, 4ywv:B
9 8gap:A 1012 84 0.2340 0.0217 0.2619 5.2 5c9h:A, 7lma:A, 7lmb:A, 7uy5:A, 7uy6:A
10 6d6v:A 980 84 0.2340 0.0224 0.2619 5.3 5c9h:B
11 7pt6:9 341 34 0.1170 0.0323 0.3235 7.3 7pt6:I, 7pt7:9
12 4wzo:71 93 41 0.1277 0.1290 0.2927 7.5
13 5lpi:C 134 24 0.1064 0.0746 0.4167 9.7 5lpi:D, 5lpi:A, 5lpi:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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