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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SDDFLWFEGIAFPTMGFRSETLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESE
IGYTALSETESPRLFSSHLPIQLFPKSFFSSKAKVIYLMRNPRDVLVSGYFFWKNMKFIKKPKSWEEYFEWFCQGTVLYG
SWFDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLILKNSSFQSMKEYVVDKTQLSGDWKNHF
TVAQAEDFDKLFQEKMADLPRELFPWE

The query sequence (length=267) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1j99:A 284 284 0.9963 0.9366 0.9366 0.0 1efh:A, 1efh:B, 3f3y:A, 3f3y:B, 3f3y:C, 3f3y:D, 4ifb:A, 4ifb:B, 1ov4:A, 2qp3:A, 2qp4:A
2 7eov:A 274 274 0.6030 0.5876 0.5876 3.07e-114 7d1x:A, 7d1x:B
3 1q20:A 294 283 0.4719 0.4286 0.4452 1.16e-88 1q1q:A, 1q1z:A, 1q22:A
4 2zyt:X 291 255 0.3858 0.3540 0.4039 3.93e-58 2zpt:X, 2zvp:X, 2zvq:X, 2zyu:X, 2zyv:X, 2zyw:X
5 7v1o:A 288 284 0.3596 0.3333 0.3380 4.62e-58 7v1o:B
6 3bfx:A 253 228 0.3446 0.3636 0.4035 3.07e-56 3bfx:B
7 3u3k:A 289 270 0.3483 0.3218 0.3444 1.52e-54 2a3r:A, 2a3r:B, 2d06:A, 2d06:B, 4gra:A, 4gra:B, 1ls6:A, 3qvu:A, 3qvu:B, 3qvv:A, 3qvv:B, 3u3j:A, 3u3j:B, 3u3k:B, 3u3m:A, 3u3o:A, 3u3r:A, 1z28:A, 1z29:A
8 2gwh:B 288 253 0.3446 0.3194 0.3636 8.00e-54 2gwh:A
9 3ckl:B 296 255 0.3708 0.3345 0.3882 1.36e-53 3ckl:A, 2z5f:A, 2z5f:B
10 1aqy:A 283 253 0.3446 0.3251 0.3636 1.60e-50 1aqu:A, 1aqu:B, 1aqy:B, 1bo6:A, 1bo6:B
11 4jvl:A 292 255 0.3371 0.3082 0.3529 6.97e-49 1g3m:A, 1g3m:B, 1hy3:A, 1hy3:B, 4jvl:B, 4jvm:A, 4jvm:B, 4jvn:A, 4jvn:B
12 2h8k:A 245 265 0.3521 0.3837 0.3547 9.16e-47 2h8k:B, 2reo:A
13 5x2b:L 283 280 0.3408 0.3216 0.3250 1.47e-44 5x2b:C, 5x2b:A, 5x2b:B, 5x2b:D, 5x2b:E, 5x2b:F, 5x2b:G, 5x2b:H, 5x2b:I, 5x2b:J, 5x2b:K
14 7r0s:A 336 226 0.2397 0.1905 0.2832 8.84e-27 7r0s:B, 7r0u:A, 7r0u:B
15 8k9y:A 322 278 0.2809 0.2329 0.2698 1.05e-25 8k9y:B
16 5mek:A 322 262 0.2509 0.2081 0.2557 7.54e-20 5mex:A
17 1x8k:A 344 140 0.1573 0.1221 0.3000 2.18e-16 1fmj:A, 1fmj:B, 1fml:A, 1fml:B, 1x8j:A, 1x8j:B, 1x8k:B, 1x8l:A, 1x8l:B
18 3mg9:A 255 208 0.2060 0.2157 0.2644 1.11e-10 3mgc:A
19 3mgb:A 286 211 0.2060 0.1923 0.2607 2.37e-07 3mgb:B
20 4eec:A 253 211 0.1985 0.2095 0.2512 4.60e-05 2ovb:A, 2ovf:A
21 3rnl:A 247 105 0.0787 0.0850 0.2000 0.39
22 2j9f:D 329 54 0.0674 0.0547 0.3333 0.57 1dtw:B, 2j9f:B
23 4gbm:A 283 134 0.1161 0.1095 0.2313 2.3
24 8chs:A 718 107 0.0861 0.0320 0.2150 4.2 8cd0:A
25 8ccy:A 754 107 0.0861 0.0305 0.2150 4.3 1nst:A
26 8qcf:K 915 50 0.0524 0.0153 0.2800 5.3
27 4gox:A 275 34 0.0449 0.0436 0.3529 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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