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BioLiP
>protein
SCVRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSS
LKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAK

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1lr5:D 160 160 1.0000 1.0000 1.0000 1.94e-120 1lr5:C, 1lr5:B, 1lr5:A, 1lrh:D, 1lrh:C, 1lrh:B, 1lrh:A
2 3bu7:B 358 82 0.1250 0.0559 0.2439 0.001 3bu7:A
3 3bu7:B 358 32 0.0563 0.0251 0.2812 4.0 3bu7:A
4 7kov:B 194 66 0.1187 0.0979 0.2879 0.033 7kov:A, 7kov:C, 7kov:D, 6xb9:A, 6xb9:B, 6xb9:C, 6xb9:D, 6xb9:E, 6xb9:F, 6xb9:G, 6xb9:H, 6xb9:I, 6xb9:J, 6xb9:K, 6xb9:L
5 4qma:A 192 67 0.1375 0.1146 0.3284 0.047
6 8uru:A 363 79 0.1500 0.0661 0.3038 0.063 8urq:A
7 5tg0:A 137 38 0.0813 0.0949 0.3421 0.47 6a53:A, 6a53:B, 6a54:A, 6a54:B, 6a55:A, 6a55:B, 8hlf:A, 8hlf:B, 5tfz:A, 5tfz:B
8 2d40:A 289 30 0.0750 0.0415 0.4000 0.76 2d40:B, 2d40:C, 2d40:D
9 5cu1:A 197 36 0.0625 0.0508 0.2778 1.3
10 4ayx:A 571 31 0.0750 0.0210 0.3871 1.7 4ayt:A, 4ayw:A, 7y48:B, 3zdq:A
11 3ht2:A 143 105 0.1812 0.2028 0.2762 2.7 3ht2:C
12 8c56:A 388 36 0.0813 0.0335 0.3611 3.0 8c57:A, 8c58:A, 8c59:A, 4dkj:A
13 4txd:A 336 65 0.1062 0.0506 0.2615 3.9
14 4urm:B 195 87 0.1313 0.1077 0.2414 4.5 5cph:A, 5cph:B, 5ctu:A, 5ctu:B, 5ctw:A, 5ctw:B, 5ctx:B, 5cty:B, 5d6p:A, 5d6p:B, 5d6q:B, 5d7c:A, 5d7c:B, 5d7d:A, 5d7d:B, 5d7r:A, 5d7r:B, 3g75:A, 3g75:B, 3g7b:A, 3g7b:B, 4p8o:A, 4p8o:B, 6tck:A, 6tck:B, 3ttz:A, 3ttz:B, 6ttg:A, 6ttg:B, 3u2d:A, 3u2d:B, 3u2k:A, 3u2k:B, 4urm:A, 4urm:C, 4urm:D, 4uro:A, 4uro:B, 4uro:C, 4uro:D, 5z9p:A, 5z9p:B
15 5ixb:A 105 24 0.0750 0.1143 0.5000 4.5 5ixb:B
16 8ch4:D 183 29 0.0625 0.0546 0.3448 5.3 8ch4:A, 8ch4:B, 8ch4:C
17 7bgd:k 118 25 0.0625 0.0847 0.4000 9.5 7aso:2, 7asp:b, 8bh6:k, 8bh7:k, 8byv:k, 6fxc:Ak, 6fxc:Bk, 7kwg:k, 5li0:k, 5nd8:k, 5nd9:k, 5ngm:Ak, 7nhl:l, 7nhm:l, 8p2f:l, 8p2g:l, 8p2h:l, 7p48:k, 6s0x:k, 6s13:k, 5t7v:S2, 5tcu:S2, 8y38:k, 8y39:k, 6yef:k
18 7qco:F 141 32 0.0813 0.0922 0.4062 9.8 7qco:O, 7qco:o, 7qco:f

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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