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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SAVSIPIKNAGFEEPSLTDYYTIDTPPGWITYDPNGLVPAKRTRITSNNGVGYTGPNSAYYNHKAPEGRNVAYVYLAQEI
GSGIAGLEQTLDAVLKPNTKYTLTVDIGNSGGSFQGFPLDGFPGYRVELLAGDTVLAADQNNLYIKEKDFKTTTVTFIAT
PESPYLGQHLGIRLINPLQGKFSGVDFDNVRLTAEPAE

The query sequence (length=198) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6a8x:A 203 200 0.9192 0.8966 0.9100 1.56e-130 6a8x:B, 6a98:A, 6a98:B, 6a98:C, 6a98:D, 6a99:A, 6a99:B, 6a99:C, 6a99:D, 6a9f:A, 6a9f:B, 6a9f:C, 6a9f:D
2 5yvl:D 206 199 0.7222 0.6942 0.7186 1.61e-101 6al6:A, 6al6:B, 6al7:A, 6al7:B, 6al7:D, 6al7:E, 6al8:A, 6al8:B, 6al8:D, 6al8:E, 5wpp:A, 5wpp:B, 5wpr:A, 5wps:A, 5wpu:A, 5yvl:A, 5yvl:B, 5yvl:C, 5z54:A, 5z54:B, 5z54:C, 5z54:D
3 6j03:A 200 200 0.6970 0.6900 0.6900 4.31e-98 6a92:A, 6a92:B, 6a92:C, 6a92:D, 6adu:A, 6adu:B, 6adu:C, 6adu:D, 5yvk:A, 5yvp:A, 5yvp:B, 5yvp:C, 5yvp:D, 5z53:A, 5z53:B, 5z53:C, 5z53:D, 5zfj:A, 5zfj:B, 5zfj:C, 5zfj:D
4 4ol8:F 427 57 0.1162 0.0539 0.4035 0.073 4ol8:A
5 7aor:aa 1558 34 0.0606 0.0077 0.3529 2.1
6 3gwz:A 339 26 0.0707 0.0413 0.5385 2.3 3gwz:D, 3gwz:C, 3gwz:B, 3gxo:A, 3gxo:D, 3gxo:C, 3gxo:B
7 6hiv:DA 1557 49 0.0859 0.0109 0.3469 2.7 6hiw:DA, 7pub:DA
8 6hiy:DA 1426 49 0.0859 0.0119 0.3469 2.8
9 8bmp:B 281 56 0.0960 0.0676 0.3393 5.3 8bmq:B, 8bms:B, 5d3m:B, 5d3m:F
10 3s99:A 330 55 0.1010 0.0606 0.3636 6.3
11 8wwu:B 492 78 0.1212 0.0488 0.3077 6.4 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
12 3c0o:A 450 29 0.0707 0.0311 0.4828 7.8 3c0o:B
13 8uzv:A 442 48 0.0707 0.0317 0.2917 9.0 9b3b:A, 9b3b:B, 8cvq:A, 8cvq:B, 8cw2:A, 8cw2:B, 6dhu:A, 6dhu:B, 6die:A, 6die:B, 6dih:A, 6dih:B, 6dim:A, 6dim:B, 6djd:A, 6djd:B, 6dje:A, 6dje:B, 6djf:A, 6djf:B, 6djg:A, 6djg:B, 6djh:A, 6djh:B, 6dji:A, 6dji:B, 6djj:A, 6djj:B, 6mj5:A, 6mj5:B, 1mu7:A, 1mu7:B, 1mu9:A, 1mu9:B, 6myz:A, 6mz0:A, 6mz0:B, 6n0d:A, 6n0d:B, 6n0n:A, 6n0n:B, 6n0o:A, 6n0o:B, 6n0r:A, 6n0r:B, 6n17:A, 6n17:B, 6n19:A, 6n19:B, 1nop:A, 1nop:B, 5nw9:A, 5nwa:A, 1rff:A, 1rff:B, 1rfi:A, 1rfi:B, 1rg1:A, 1rg1:B, 1rg2:A, 1rg2:B, 1rgt:A, 1rgt:B, 1rgu:A, 1rgu:B, 1rh0:A, 1rh0:B, 7ufy:A, 7ufy:B, 7ufz:A, 7ufz:B, 8uv1:A, 8uv1:B, 8uzv:B, 8uzz:A, 8uzz:B, 8v0b:A, 8v0b:B, 8v0c:A, 8v0c:B, 6w4r:A, 6w4r:B, 6w7j:A, 6w7j:B, 6w7k:A, 6w7k:B, 6w7l:A, 6w7l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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