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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLR
AICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVG
FSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFP

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8sjx:A 220 220 1.0000 1.0000 1.0000 3.05e-156 8sjy:A
2 4nef:A 239 220 0.6182 0.5690 0.6182 8.26e-96
3 5dye:D 253 221 0.5773 0.5020 0.5747 2.65e-82 5c5x:A, 5c5x:B, 5c5x:C, 5c5x:D, 5c5x:E, 5c5x:H, 3d9s:C, 3d9s:D, 5dye:A, 5dye:B, 5dye:C
4 8ct2:D 247 224 0.5000 0.4453 0.4911 2.16e-73 8ct2:B, 8ct2:C, 8ct2:A, 8cte:O, 8cte:S, 8cte:R, 8cte:M, 7uze:D, 7uze:B, 7uze:C, 7uze:A
5 2evu:A 245 246 0.3455 0.3102 0.3089 7.64e-23 2f2b:A
6 5bn2:A 260 185 0.2727 0.2308 0.3243 1.54e-22
7 8uy6:A 244 209 0.3364 0.3033 0.3541 1.62e-22 3nka:A, 2o9e:A, 8uy6:C, 8uy6:E, 8uy6:G, 8uy6:I, 8uy6:K, 8uy6:M, 8uy6:O
8 8c9h:A 253 239 0.3409 0.2964 0.3138 8.09e-19 8c9h:B, 8c9h:C, 8c9h:D, 8c9h:E, 8c9h:F, 8c9h:G, 8c9h:H, 6n1g:A, 6n1g:C, 6n1g:B, 6n1g:D, 6qzi:A, 6qzj:A
9 1fx8:A 254 244 0.3182 0.2756 0.2869 4.66e-14
10 3c02:A 242 238 0.2955 0.2686 0.2731 7.55e-10
11 6f7h:C 253 212 0.2318 0.2016 0.2406 1.24e-07 6f7h:A, 6f7h:B
12 8jy6:A 242 241 0.2773 0.2521 0.2531 3.77e-06 8jy6:B, 8jy6:C, 8jy6:D, 8jy8:A, 8jy8:B, 8jy8:C, 8jy8:D
13 7xuh:A 707 45 0.0636 0.0198 0.3111 0.88 7xuh:B, 7xuj:A, 7xuj:B, 7xul:A, 7xul:B
14 4o23:A 376 42 0.0682 0.0399 0.3571 4.7 4o23:B, 4ppz:A, 4pqa:A, 5uej:A, 5uej:B
15 3n9m:A 503 42 0.0591 0.0258 0.3095 5.3 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
16 6jr9:A 269 75 0.0955 0.0781 0.2800 6.4 5c7y:A, 5c7y:B, 5c81:A, 5c81:B, 5c8x:A, 5c8x:B, 5c8z:A, 5c8z:B, 5ie4:A, 5ie4:B, 5ie5:A, 5ie5:B, 5ie6:A, 5ie6:B, 5ie7:A, 5ie7:B, 6jqz:A, 6jqz:B, 6jr2:A, 6jr2:B, 6jr5:A, 6jr5:B, 6jr9:B, 6jra:A, 6jra:B, 6jrb:A, 6jrb:B, 6jrc:A, 6jrc:B, 6jrd:A, 6jrd:B, 3wzm:A, 3wzm:B, 3wzm:C
17 3mlw:H 228 17 0.0455 0.0439 0.5882 6.4 3mlw:I
18 6f0k:B 961 61 0.0864 0.0198 0.3115 7.3
19 7tap:C 198 38 0.0727 0.0808 0.4211 8.3
20 7qt0:E 217 17 0.0455 0.0461 0.5882 8.6 7qt0:A, 7qt0:C, 7qt0:G, 7qt0:I, 7qt0:K, 7qt3:A, 7qt3:C, 7qt4:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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