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BioLiP
>protein
RYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESE
ITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESV
DGSDFKDVFLAQSVVVADSGHLTQLQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDAELNWRITLVFTVFM
MALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWD

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6mhu:F 311 311 1.0000 1.0000 1.0000 0.0
2 6mi7:F 217 134 0.4212 0.6037 0.9776 3.73e-87
3 6mi7:F 217 94 0.2669 0.3825 0.8830 5.08e-47
4 6s8h:F 239 130 0.4148 0.5397 0.9923 3.36e-85 6s8g:F, 6s8n:F
5 6s8h:F 239 109 0.2830 0.3682 0.8073 1.15e-53 6s8g:F, 6s8n:F
6 7efo:F 219 131 0.4019 0.5708 0.9542 1.76e-66
7 7efo:F 219 91 0.2251 0.3196 0.7692 5.78e-45
8 8frl:F 316 321 0.2669 0.2627 0.2586 8.41e-35 8frm:F, 8fro:F, 8ufg:F, 8ufh:F
9 8frn:F 289 289 0.2315 0.2491 0.2491 1.05e-29
10 8frp:F 223 135 0.1286 0.1794 0.2963 3.32e-15
11 8frp:F 223 64 0.0547 0.0762 0.2656 0.001
12 8frl:G 338 184 0.1318 0.1213 0.2228 2.38e-04 8frm:G, 8fro:G, 8ufg:G, 8ufh:G
13 8frn:G 297 87 0.0707 0.0741 0.2529 0.002
14 6mhu:G 341 164 0.1350 0.1232 0.2561 0.005
15 5i9n:A 261 67 0.0772 0.0920 0.3582 1.6 4bku:A, 5i7f:B, 5i7f:E, 5i7f:H, 5i7f:C, 5i7f:A, 5i7f:F, 5i7f:G, 5i7f:D, 5i7f:I, 5i7f:K, 5i7f:L, 5i7f:J, 5i7s:A, 5i7v:A, 5i7v:B, 5i7v:C, 5i8w:A, 5i8z:A, 5i9l:A, 5i9m:A, 5i9m:B, 5i9m:C, 5ifl:B, 5ifl:A, 5ifl:C, 5ifl:D, 5ifl:E, 5ifl:F, 5ifl:G, 5ifl:H, 5ifl:I, 5ifl:J, 5ifl:K, 5ifl:L, 5ifl:M, 5ifl:N, 5ifl:O, 5ifl:P, 4rlh:A, 4rlh:B, 4rlh:D, 4rlh:C, 5trt:A, 5trt:B, 5trt:C, 5trt:D
16 7kwd:A 473 32 0.0354 0.0233 0.3438 3.5 7kwd:B
17 4rdq:A 366 129 0.0900 0.0765 0.2171 5.4 6n23:A, 6n23:B, 6n23:C, 6n23:D, 6n23:E, 6n25:A, 6n25:B, 6n25:C, 6n25:D, 6n25:E, 6n27:A, 6n27:B, 6n27:C, 6n27:D, 6n27:E, 6n28:A, 6n28:B, 6n28:C, 6n28:D, 6n28:E, 4rdq:B, 4rdq:C, 4rdq:D, 4rdq:E, 5t5n:A, 5t5n:B, 5t5n:C, 5t5n:D, 5t5n:E
18 6j9f:D 1215 121 0.0900 0.0230 0.2314 9.0 6j9e:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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