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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RVHEVIIFNELGEICAAVHMQKPQVSPCCNTHCSLRNVAKIVEQIDRAVYSIDLAIYTFTSLFLADSIKRALQRGVIIRI
ISDGEMVYSKGSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYSIVISGSVNWTALGLGGN
WENCIITADDKLTATFQAEFQRMWRAFAKT

The query sequence (length=190) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gel:B 198 190 0.9737 0.9343 0.9737 1.52e-139 4gel:A, 4gem:A, 4gem:B
2 4ggj:A 165 138 0.2263 0.2606 0.3116 9.08e-18 4ggk:A
3 1bys:A 152 147 0.1947 0.2434 0.2517 1.49e-06
4 4jbm:A 190 61 0.1000 0.1000 0.3115 0.21 4jbm:B
5 1rv8:B 305 43 0.0737 0.0459 0.3256 2.0 1rv8:A, 1rv8:C, 1rv8:D, 1rvg:A, 1rvg:B, 1rvg:C, 1rvg:D
6 5ifu:B 445 47 0.0579 0.0247 0.2340 3.0 5ifu:A, 4wi1:A, 4wi1:B
7 6t7k:A 494 47 0.0579 0.0223 0.2340 3.2 7f96:A, 7f97:A, 7f97:B, 7f97:C, 7f97:D, 4olf:A, 4q15:A, 4q15:B, 7qb7:A, 7qc1:A, 7qc1:D, 7qc1:I, 7qc2:A, 7v9d:A, 4ydq:A, 4ydq:B
8 2pfz:A 301 52 0.0789 0.0498 0.2885 3.6
9 5diy:A 463 30 0.0579 0.0238 0.3667 4.2 5diy:B
10 3ial:B 505 57 0.0789 0.0297 0.2632 6.5 3ial:A
11 2qmi:F 447 72 0.0947 0.0403 0.2500 6.5 2qmi:E, 2qmi:G, 2qmi:H
12 2wts:A 197 26 0.0579 0.0558 0.4231 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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