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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVE
VDYRSYEVTVENFLRVLTGRIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNE
LLFIIDTCQGASMYERFYSPNIMALASSQVGEDSLSHQPDPAIGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKS
LCVSTPGHRTDLFQRDPKNVLITDFFGSVRKVEITTETIKLQQMEPLKYAEQLPVAQIIHQKPKLKDWHPPGGFILGLWA
LIIMVFFKTY

The query sequence (length=330) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7wld:K 331 330 1.0000 0.9970 1.0000 0.0 8imx:K, 8imy:K, 7w72:K
2 7fqi:A 265 214 0.2091 0.2604 0.3224 2.99e-27 4aw9:A, 4awa:A, 4awb:A, 4awb:B, 7fqh:A, 7fqh:B, 7fqh:D, 7fqi:C, 7fqi:B, 7fqj:A, 7fqj:C, 7fqj:B, 7fqk:A, 7fqk:B, 7fqk:C, 7fqk:D, 7fql:A, 7fql:F, 7fql:B, 7fql:H, 7fql:C, 7fql:G, 7fql:D, 7fql:E, 5lu8:A, 5lu9:A, 5lua:B, 5lub:B, 7o50:A, 7o50:B
3 6azt:A 274 190 0.1758 0.2117 0.3053 3.69e-22
4 5obt:B 230 190 0.1727 0.2478 0.3000 3.43e-21 5obt:A
5 6idv:A 425 246 0.1970 0.1529 0.2642 5.72e-21 6idv:B
6 3vc6:A 420 68 0.0667 0.0524 0.3235 0.77
7 5bsz:A 247 106 0.0697 0.0931 0.2170 2.0
8 8fok:1 1046 136 0.1091 0.0344 0.2647 5.3 3flo:B, 3flo:D, 3flo:F, 3flo:H, 4fxd:A, 4fxd:B, 4fyd:A, 4fyd:B
9 2j5s:A 250 162 0.1091 0.1440 0.2222 8.3 2j5s:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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