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BioLiP
>protein
RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNLIQACLNAP
D

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1mnm:A 85 81 1.0000 0.9529 1.0000 6.85e-56 1mnm:B
2 1hbx:E 89 81 0.6790 0.6180 0.6790 1.10e-36 1hbx:A, 1hbx:B, 1hbx:D, 1k6o:B, 1k6o:C, 1srs:A, 1srs:B
3 8c84:B 93 64 0.2840 0.2473 0.3594 7.22e-12 6byy:D, 6bz1:D, 1c7u:A, 1c7u:B, 8c84:A, 1egw:A, 1egw:B, 1egw:C, 1egw:D, 3kov:B, 3kov:A, 3kov:I, 3kov:J, 3mu6:A, 3mu6:B, 3mu6:D, 3mu6:C, 3p57:A, 3p57:B, 3p57:C, 3p57:D, 3p57:I, 3p57:J, 8pde:D, 8pde:E, 8pde:A, 8pde:B, 8q9n:A, 8q9n:B, 8q9p:B, 8q9p:A, 8q9q:A, 8q9q:B, 8q9r:A, 8q9r:B, 8q9r:E, 8q9r:F, 6wc2:C, 7x1n:A, 7x1n:D, 7x1n:B, 7x1n:C, 7xuz:D, 7xuz:C, 7xuz:H, 7xuz:G
4 1n6j:A 93 64 0.2840 0.2473 0.3594 3.97e-11 6byy:A, 6byy:B, 6byy:C, 6bz1:C, 6bz1:A, 6bz1:B, 1n6j:B, 1tqe:P, 1tqe:Q, 1tqe:R, 1tqe:S, 6wc2:I, 6wc2:J, 6wc2:D, 6wc2:A, 6wc2:B, 6wc5:A, 6wc5:B, 6wc5:C, 6wc5:D
5 8ci0:AAA 666 22 0.1358 0.0165 0.5000 4.2 8ci0:BBB, 8ci0:CCC, 1itz:A, 1itz:B, 1itz:C
6 3iqe:A 282 31 0.1358 0.0390 0.3548 6.7 3iqe:D, 3iqe:B, 3iqe:F, 3iqe:C, 3iqe:E, 3iqf:A, 3iqf:D, 3iqf:B, 3iqf:F, 3iqf:C, 3iqf:E, 3iqf:G, 3iqf:J, 3iqf:H, 3iqf:L, 3iqf:I, 3iqf:K, 3iqz:A, 3iqz:D, 3iqz:B, 3iqz:F, 3iqz:C, 3iqz:E
7 6lfl:A 471 30 0.1358 0.0234 0.3667 6.8
8 7usf:A 265 23 0.0864 0.0264 0.3043 6.9 5cz2:A, 5cz2:B, 5cz2:C, 5cz2:D, 5cz2:E, 5cz2:G, 5cz2:H, 5cz2:I, 5cz2:J, 5cz2:K, 5cz2:L, 3jca:A, 3jca:D, 3jca:E, 3jca:G, 3jca:C, 3jca:H, 3jca:B, 3jca:F, 7usf:B, 7ut1:a, 7ut1:d, 7ut1:e, 7ut1:A, 7ut1:D, 7ut1:E, 7ut1:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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