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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYALMKLHYADLTDASSLRRWIDVIKPDEVYNLAA
QSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWY
TVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPD
DYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELA
KREKVLVDAGY

The query sequence (length=331) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1n7g:B 336 334 1.0000 0.9851 0.9910 0.0 1n7g:A, 1n7g:C, 1n7g:D, 1n7h:A, 1n7h:B
2 7kf3:A 362 356 0.6163 0.5635 0.5730 2.30e-141 7kf3:B, 7kf3:C, 7kf3:D
3 5in4:A 355 347 0.5831 0.5437 0.5562 3.68e-135 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
4 5uzh:A 345 343 0.6042 0.5797 0.5831 1.62e-133
5 2z1m:A 338 337 0.5589 0.5473 0.5490 1.25e-120 2z1m:D, 2z95:A, 2z95:D
6 1rpn:D 322 325 0.5106 0.5248 0.5200 5.59e-111 1rpn:A, 1rpn:B, 1rpn:C
7 2pk3:A 309 309 0.2991 0.3204 0.3204 2.66e-38 2pk3:B
8 7us5:A 346 340 0.2991 0.2861 0.2912 2.03e-36 7us5:B, 7us5:C, 7us5:D
9 2p5u:A 311 316 0.2931 0.3119 0.3070 2.59e-22 2p5u:B, 2p5u:C, 2p5u:D, 2p5y:A
10 6x3b:A 300 277 0.2266 0.2500 0.2708 6.55e-20 6x3b:B, 6x3b:C, 6x3b:D
11 4zrn:A 309 321 0.2508 0.2686 0.2586 6.55e-19 4zrm:A, 4zrm:B, 4zrn:B
12 7yst:A 312 205 0.2205 0.2340 0.3561 4.95e-17 7ys8:A, 7ys8:B, 7ys9:A, 7ys9:B, 7ysa:A, 7ysa:B, 7ysm:A, 7ysm:B, 7yst:B, 7ysy:A, 7ysy:B, 7yt0:A, 7yt0:B
13 1keu:A 361 288 0.2326 0.2133 0.2674 1.66e-16 1g1a:A, 1g1a:B, 1g1a:C, 1g1a:D, 1keu:B, 1kew:A, 1kew:B
14 1ker:B 347 353 0.2568 0.2450 0.2408 8.49e-16 1kep:A, 1kep:B, 1ker:A, 1ket:A, 1ket:B, 1oc2:A, 1oc2:B
15 2hun:A 329 333 0.2538 0.2553 0.2523 2.05e-15 2hun:B
16 8du1:A 361 339 0.2538 0.2327 0.2478 8.77e-15 8du1:B, 8du1:C, 8du1:D
17 1orr:A 338 337 0.2508 0.2456 0.2463 1.88e-14 1orr:B, 1orr:C, 1orr:D
18 1bxk:B 344 339 0.2719 0.2616 0.2655 5.15e-14 1bxk:A
19 2pzm:A 316 314 0.2508 0.2627 0.2643 1.27e-11 2pzk:A, 2pzk:B, 2pzl:A, 2pzl:B, 2pzm:B
20 6wj9:B 308 239 0.2145 0.2305 0.2971 2.20e-11 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
21 6bi4:C 311 317 0.2387 0.2540 0.2492 1.04e-10 6bi4:B, 6bi4:D, 6bi4:A
22 6dnt:A 310 303 0.2205 0.2355 0.2409 5.71e-10
23 1r66:A 322 316 0.2356 0.2422 0.2468 1.55e-09 1r6d:A
24 2b69:A 312 325 0.2387 0.2532 0.2431 3.95e-09 4gll:A, 4gll:B
25 2q1w:A 300 311 0.2236 0.2467 0.2379 5.77e-09 2q1w:B, 2q1w:C
26 3lu1:A 336 324 0.2417 0.2381 0.2469 1.42e-08 3lu1:B, 3lu1:C, 3lu1:D, 3ru7:A, 3ru7:B, 3ru7:C, 3ru7:D, 3ru9:A, 3ru9:B, 3ru9:C, 3ru9:D, 3rua:A, 3rua:B, 3rua:C, 3rua:D, 3ruc:A, 3ruc:B, 3ruc:C, 3ruc:D, 3rud:A, 3rud:B, 3rud:C, 3rud:D, 3rue:A, 3rue:B, 3rue:S, 3rue:b, 3ruf:A, 3ruf:B, 3ruf:S, 3ruf:b, 3ruh:A, 3ruh:B, 3ruh:C, 3ruh:D
27 6bwl:A 313 313 0.2356 0.2492 0.2492 1.49e-08
28 3ehe:A 290 319 0.2508 0.2862 0.2602 2.18e-08 3ehe:B
29 3aw9:A 304 185 0.1692 0.1842 0.3027 2.30e-08 3aw9:B, 3aw9:C, 3icp:A, 3ko8:A
30 1wvg:A 352 113 0.1208 0.1136 0.3540 3.11e-08 1wvg:B
31 5u4q:B 304 320 0.2447 0.2664 0.2531 3.31e-08
32 2c20:A 329 322 0.2477 0.2492 0.2547 9.95e-08 2c20:B, 2c20:C, 2c20:D, 2c20:E, 2c20:F
33 3vps:A 303 320 0.2205 0.2409 0.2281 2.46e-07 3vps:B
34 5u4q:A 321 326 0.2356 0.2430 0.2393 4.75e-07
35 1gy8:C 370 265 0.2175 0.1946 0.2717 5.12e-07 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
36 1sb8:A 341 317 0.2387 0.2317 0.2492 5.29e-07 1sb9:A
37 6vlo:A 319 236 0.1692 0.1755 0.2373 1.30e-06 6vlo:B, 6vlo:C, 6vlo:D
38 6pnl:A 336 238 0.1843 0.1815 0.2563 1.91e-06 6pmh:A
39 1rkx:C 351 339 0.2508 0.2365 0.2448 2.73e-05 1rkx:A, 1rkx:B, 1rkx:D
40 8sk0:B 330 241 0.1752 0.1758 0.2407 4.21e-05 8shh:A, 8shh:B, 8sk0:A
41 4lis:A 364 345 0.2689 0.2445 0.2580 6.90e-05 4lis:B, 4lis:C
42 1z45:A 674 164 0.1299 0.0638 0.2622 4.09e-04
43 7k3p:A 329 325 0.2115 0.2128 0.2154 8.45e-04 7k3p:B
44 5z75:A 306 170 0.1480 0.1601 0.2882 0.001 5z75:B, 5z75:D
45 4r1s:A 319 73 0.0755 0.0784 0.3425 0.008 4r1s:B
46 4lk3:B 274 315 0.2145 0.2591 0.2254 0.008 4lk3:A, 4lk3:C, 4lk3:D, 4lk3:E, 4lk3:F, 4m55:A, 4m55:B, 4m55:C, 4m55:D
47 7cgv:A 310 171 0.1390 0.1484 0.2690 0.010 7cgv:B, 7cgv:C, 7cgv:D
48 8wov:B 341 342 0.2326 0.2258 0.2251 0.012 8wop:A, 8wop:B, 8wov:A, 8wow:A, 8wow:B
49 6vo6:D 311 166 0.1299 0.1383 0.2590 0.015 6vo6:A, 6vo6:B, 6vo6:C, 6vo8:A, 6vo8:B
50 4twr:A 325 212 0.1541 0.1569 0.2406 0.030 4wok:A
51 1a9y:A 338 258 0.1813 0.1775 0.2326 0.031 1a9z:A, 5gy7:A, 5gy7:B, 1kvq:A, 1kvr:A, 1kvs:A, 1kvt:A, 1kvu:A, 1lrj:A, 1lrk:A, 1lrl:A, 1nah:A, 1nai:A, 1uda:A, 1udb:A, 1udc:A, 2udp:A, 2udp:B, 1xel:A
52 6kv9:A 299 312 0.2447 0.2709 0.2596 0.066 6kvc:A
53 5tqm:A 315 72 0.0695 0.0730 0.3194 0.077 5tqm:B
54 3a1n:A 315 170 0.1208 0.1270 0.2353 0.077 3a1n:B, 3a4v:A, 3a4v:B, 3a9w:A, 3a9w:B, 3ajr:A, 3ajr:B
55 6nbr:A 316 61 0.0634 0.0665 0.3443 0.099 6nbr:B, 6nbr:C, 6nbr:D
56 7kn1:A 336 324 0.2266 0.2232 0.2315 0.10 7kn1:B
57 2ggs:A 273 183 0.1450 0.1758 0.2623 0.12 2ggs:B
58 7zm7:E 353 123 0.0997 0.0935 0.2683 0.16 7zmb:E, 7zmg:E
59 3c1t:B 326 69 0.0695 0.0706 0.3333 0.17 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
60 8fet:A 334 51 0.0574 0.0569 0.3725 0.19 8fet:B, 8feu:A, 8feu:B, 8fev:A, 8fev:B, 8few:A, 8few:B
61 1vl0:A 281 151 0.1118 0.1317 0.2450 0.33 1vl0:B, 1vl0:C
62 6k0g:A 335 334 0.2326 0.2299 0.2305 0.78 6k0h:A, 6k0i:A
63 1y1p:A 342 139 0.1088 0.1053 0.2590 0.99 1y1p:B
64 7c1e:A 342 145 0.1118 0.1082 0.2552 1.3 7c1e:B, 7c3v:A, 5z2x:A, 5z2x:B, 8zav:A, 8zav:B, 5zec:A, 5zec:B, 5zed:A, 5zed:B
65 3enk:A 340 327 0.2387 0.2324 0.2416 1.3 3enk:B
66 7ug8:B 330 45 0.0423 0.0424 0.3111 1.6 7ug8:A
67 8fip:A 338 51 0.0514 0.0503 0.3333 1.7 8fio:A, 8fio:B, 8fip:B
68 5bju:A 340 94 0.0755 0.0735 0.2660 2.0 5bju:B, 5bjv:A, 5bjv:B, 5bjw:A, 5bjw:B, 5bjx:A, 5bjx:B, 5bjy:A, 5bjy:B
69 4hnv:B 1033 135 0.1027 0.0329 0.2519 2.6 8gk8:D
70 3bg5:B 1074 135 0.1027 0.0317 0.2519 2.7 3bg5:D, 8gk8:C, 3hb9:B, 3hb9:D, 3hbl:B, 3hbl:D, 4hnt:B, 4hnt:D, 4hnu:B, 4hnu:D, 4hnv:D, 3ho8:A, 3ho8:C, 3ho8:B
71 3ho8:D 934 135 0.1027 0.0364 0.2519 2.7
72 3bg5:A 1137 135 0.1027 0.0299 0.2519 2.9 3bg5:C, 8gk8:A, 8gk8:B, 3hb9:A, 3hb9:C, 3hbl:A, 3hbl:C, 4hnt:A, 4hnt:C, 4hnu:A, 4hnu:C, 4hnv:A, 4hnv:C
73 7xpo:A 344 160 0.1148 0.1105 0.2375 3.3 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
74 8fem:A 327 115 0.0876 0.0887 0.2522 4.1 8fen:A
75 8bpl:A 316 38 0.0423 0.0443 0.3684 4.5
76 5dcy:A 366 39 0.0453 0.0410 0.3846 4.6 5cob:A, 5cob:B, 5cob:C, 5cob:D, 5dbf:A, 5dbf:B, 5dbg:A, 5dbg:B, 5dbi:A, 5dbi:B, 5dcu:A, 5dcu:B, 5dcy:B, 5df1:A, 5df1:B, 5emh:A
77 5f5n:A 289 63 0.0604 0.0692 0.3175 4.6 5f5n:B
78 8r2j:B 275 84 0.0604 0.0727 0.2381 6.2 8r2j:A
79 8ova:Bb 144 55 0.0393 0.0903 0.2364 6.7 8ove:Bb, 5t5h:b, 4v8m:Bb
80 4id9:B 328 185 0.1208 0.1220 0.2162 7.7 4id9:A, 4idg:A, 4idg:B
81 5ex8:A 414 58 0.0544 0.0435 0.3103 8.4 5ex9:A
82 7mvv:A 1542 44 0.0393 0.0084 0.2955 8.6 4knh:B, 7tbi:I1, 7tbi:I2, 7tbj:I1, 7tbj:I2, 7tbj:I3, 7tbj:I4, 7tbj:I5, 7tbk:I1, 7tbk:I2, 7tbk:I3, 7tbk:I4, 7tbk:I5, 7tbl:I1, 7tbl:I2, 7tbl:I3, 7tbl:I4, 7tbl:I5, 7tbm:I1, 7tbm:I2, 7tbm:I3, 7tbm:I4, 7tbm:I5
83 1p33:B 269 91 0.0725 0.0892 0.2637 9.2 1p33:A, 1p33:C, 1p33:D
84 7er7:A 207 59 0.0665 0.1063 0.3729 9.9 7er6:A, 7er6:B, 7er7:B, 7er8:A, 7er8:B, 7er9:A, 7er9:B, 7era:A, 7era:B, 7erb:A, 7erb:B, 7erb:C, 7erb:D, 7erc:A, 7erc:B, 7erd:A, 7erd:B, 7ere:A, 7ere:B, 7ere:C, 7ere:D, 1hdo:A, 1he2:A, 1he3:A, 1he4:A, 1he5:A, 5oog:A, 5ooh:A, 6opl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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