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BioLiP
>protein
RITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKKSGEVAVLKRDGRYIYYLITKKRASHKPT
YENLQKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEATDIKITVYTL

The query sequence (length=140) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2l8r:A 150 140 1.0000 0.9333 1.0000 4.97e-104 4j5r:A, 4j5r:B, 4j5s:A, 4j5s:B, 4j5s:C, 4j5s:D
2 5m3e:A 152 147 0.2786 0.2566 0.2653 1.67e-10
3 7omu:AAA 376 154 0.2429 0.0904 0.2208 4.40e-06 7omu:BBB
4 6lfr:A 166 42 0.1000 0.0843 0.3333 1.1 6lfs:A, 6lft:A, 6lfu:A, 6lfu:B
5 3q3h:B 595 31 0.0786 0.0185 0.3548 2.6
6 3q3h:A 620 31 0.0786 0.0177 0.3548 2.7 8j30:A, 8j30:B
7 5kkb:A 469 60 0.1214 0.0362 0.2833 3.2 5kkb:B, 1nxc:A
8 3dlp:X 504 43 0.1143 0.0317 0.3721 4.6 3cw8:X, 3cw9:A, 3cw9:B, 2qvx:X, 2qvy:X, 2qvz:X, 2qw0:X, 1t5d:X, 1t5h:X
9 4v61:BQ 122 34 0.0929 0.1066 0.3824 4.7
10 7wzm:A 458 99 0.1571 0.0480 0.2222 4.8 7wzl:A
11 5fl7:H 113 46 0.1071 0.1327 0.3261 5.5
12 7c3k:B 389 30 0.1000 0.0360 0.4667 5.8 7c3k:A, 8jqz:A, 8jqz:B
13 4gc1:A 275 58 0.1214 0.0618 0.2931 6.7 4gc1:B, 4gc2:B, 3m7j:A, 3m7j:B
14 3v2b:A 176 35 0.0714 0.0568 0.2857 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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