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BioLiP
>protein
REKLRKMLDDLLVSVDHSGNIAVLRTPPGGAPFLASFIDRVGMEEVVGTIAGDDTVFVLARDPMTGQELGEFLSQR

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6wjp:A 80 76 0.9868 0.9375 0.9868 1.65e-49 5jvo:A, 5jvo:B, 6wjo:A, 6wjo:B, 6wjp:B
2 3fhz:D 166 68 0.5395 0.2470 0.6029 1.07e-24 3cag:A, 3cag:C, 3cag:E, 3cag:B, 3cag:D, 3cag:F, 3ere:D, 3fhz:C, 3fhz:E, 3fhz:B, 3fhz:F, 3fhz:A, 3laj:C, 3laj:E, 3laj:B, 3laj:F, 3laj:A, 3laj:D, 3lap:C, 3lap:E, 3lap:B, 3lap:F, 3lap:A, 3lap:D, 2zfz:A, 2zfz:C, 2zfz:F, 2zfz:B, 2zfz:D, 2zfz:E
3 1b4b:A 71 64 0.3158 0.3380 0.3750 1.39e-12 1b4b:C, 1b4b:B
4 2p5m:A 82 61 0.3026 0.2805 0.3770 2.69e-12 2p5m:B, 2p5m:C
5 1xxa:C 73 65 0.3158 0.3288 0.3692 1.74e-09 1xxa:A, 1xxa:B, 1xxa:D, 1xxa:F, 1xxa:E, 1xxb:A, 1xxb:C, 1xxb:B, 1xxb:D, 1xxb:E, 1xxb:F
6 5eer:A 247 60 0.2500 0.0769 0.3167 0.93 5ees:A
7 7mqa:NA 295 51 0.1842 0.0475 0.2745 1.9 7mq8:NA, 7mq9:NA
8 3lot:D 313 59 0.2368 0.0575 0.3051 2.1 3lot:A, 3lot:B, 3lot:C
9 8bpo:t2 418 27 0.1447 0.0263 0.4074 2.5
10 6gsj:AA 65 28 0.1579 0.1846 0.4286 2.7 5e7k:AA, 5e81:AA, 5el4:AA, 5el6:AA, 5el7:AA, 6gsk:AA, 6gsl:AA, 5ib7:AA, 5ib8:AA, 5ibb:AA
11 6c4m:C 418 21 0.1447 0.0263 0.5238 3.5
12 4to8:A 279 33 0.1842 0.0502 0.4242 4.6 4to8:B
13 6yw5:SS 81 57 0.2500 0.2346 0.3333 5.5 6ywe:SS, 6ywx:SS, 6ywy:SS
14 6joo:A 834 35 0.1711 0.0156 0.3714 6.2
15 8hmc:B 1195 23 0.1184 0.0075 0.3913 6.8 8hmd:B
16 7unr:s 83 25 0.1447 0.1325 0.4400 7.4 8cd1:s, 6spc:s, 6spe:s, 6spf:s, 6spg:s, 7unu:s, 7unv:s, 7unw:s
17 3a22:A 614 40 0.1842 0.0228 0.3500 7.5 3a22:B, 3a23:A, 3a23:B
18 3uoz:A 540 48 0.1842 0.0259 0.2917 7.9 3uov:A, 3uov:B, 3uox:A, 3uox:B, 3uoy:A, 3uoy:B, 3uoz:B, 3up4:A, 3up4:B, 3up5:A, 3up5:B
19 2rc5:A 306 25 0.1579 0.0392 0.4800 8.8 2rc5:B, 2rc5:C, 2rc5:D, 2rc6:A, 2rc6:B, 2rc6:C, 2rc6:D
20 3a9i:A 347 29 0.1447 0.0317 0.3793 9.9 2ztj:A, 2ztk:A, 2zyf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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