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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RATFQFLPDEARSLPPPKLTDPRLAFVGFLGYCSGLIDNAIRRRPVLLAGLHRQLLYITSFVFVGYYLLKRQDYMYAVRD
HDMFSYIKSHPEDFPEKDKKTYGEVFEEFHPVR

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7r41:d 113 113 1.0000 1.0000 1.0000 6.95e-81 7r42:d, 7r44:d, 7r45:d, 7r47:d, 7r48:d, 7r4c:d, 7r4d:d, 7r4f:d, 7r4g:d
2 7v2h:g 122 113 0.8584 0.7951 0.8584 6.94e-72 5gup:g, 8ud1:1d, 8ugi:1d, 7v2c:g, 7v2d:g, 7v2e:g, 7v2f:g, 7v2k:g, 7v2r:g, 7v30:g, 7v31:g, 7v32:g, 7v33:g, 7v3m:g, 7vbl:g, 7vbp:g, 7vc0:g, 7vwl:g, 7vxs:g, 7vy1:g, 7vy9:g, 7vye:g, 7vyg:g, 7vyi:g, 7vys:g, 7vz8:g, 7vzv:g, 7vzw:g, 7w00:g, 7w0h:g, 7w0r:g, 7w0y:g, 7w1o:g, 7w1p:g, 7w1t:g, 7w1u:g, 7w1v:g, 7w1z:g, 7w20:g, 7w2k:g, 7w2l:g, 7w2r:g, 7w2u:g, 7w2y:g, 7w31:g, 7w32:g, 7w35:g, 7w4c:g, 7w4d:g, 7w4e:g, 7w4f:g, 7w4g:g, 7w4j:g, 7w4k:g, 7w4l:g, 7w4m:g, 7w4n:g, 7w4q:g
3 5xtc:g 119 110 0.7611 0.7227 0.7818 5.78e-64 5xtd:g, 5xth:g, 5xti:g, 5xti:Bg
4 8iaq:d 120 110 0.7168 0.6750 0.7364 1.01e-60 8ib6:d, 8ibb:d, 8ibf:d, 8ic4:d
5 1d1q:A 159 96 0.2035 0.1447 0.2396 0.78 1d1p:A, 1d1p:B, 1d2a:B
6 8twg:B 385 75 0.1504 0.0442 0.2267 3.6
7 6jo5:2 119 33 0.1062 0.1008 0.3636 3.8
8 7yca:2 205 27 0.0973 0.0537 0.4074 7.7
9 7zqc:9 156 35 0.0973 0.0705 0.3143 7.9 6jo5:9
10 6oop:A 392 23 0.0973 0.0281 0.4783 8.0 6euq:A, 6ooq:A, 6vrz:A, 6vs0:A, 6vs1:A, 4zow:A, 4zp0:A
11 8jze:B 192 33 0.1062 0.0625 0.3636 8.0 8jw0:B, 8jzf:B
12 6ijo:G 70 42 0.1150 0.1857 0.3095 8.6 7r3k:G
13 8j80:B 288 36 0.1239 0.0486 0.3889 8.6 8j7u:A, 8j7u:B, 8j7w:A, 8j7w:B, 8j7y:A, 8j7y:B
14 8amq:A 464 29 0.0973 0.0237 0.3793 9.4 8amo:A, 8ckn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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