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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
RAISRTNENDPAKHGDQHEGQHYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYL
LYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRFDQPLEASTWLKNFKTTNERFLNQIKVQ
EKYVWNKRESTEKGSPLGEVVEQGITRVRNATDAVGIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKREDKSPIAPE
ELALVHNLRKMMKNDWHGGAIVSALSQTGSLFKPRKAYLPQELLGKEGFDALDPFIPILVSNYNPKEFESCIQYYLENNW
LQHEKAPTEEGKKELLFLSNANPSLLERHCAYL

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7l08:AX 353 353 1.0000 1.0000 1.0000 0.0 8any:AX, 8csp:X, 8csq:X, 8csr:X, 8css:X, 8cst:X, 8csu:X, 8k2a:Se, 7og4:AX, 8oir:AX, 8ois:AX, 7p2e:X, 7pnx:X, 7pny:X, 7pnz:X, 7po0:X, 7po1:X, 7po2:X, 7po3:X, 7qi4:AX, 7qi5:AX, 7qi6:AX, 8qrk:X, 8qrl:X, 8qrm:X, 8qrn:X, 6rw4:X, 6rw5:X, 6vlz:AX, 6vmi:AX, 8xt0:Se, 8xt2:Se, 6zm5:AX, 6zm6:AX, 6zs9:AX, 6zsa:AX, 6zsb:AX, 6zsc:AX, 6zsd:AX, 6zse:AX, 6zsg:AX
2 6gaw:Ag 353 353 0.8952 0.8952 0.8952 0.0 5aj3:g, 5aj4:Ag, 6gaz:Ag, 3jd5:g, 6neq:g, 6nf8:g, 7nqh:Ag, 7nql:Ag, 7nsi:Ag, 7nsj:Ag, 8oin:AX, 8oip:AX, 6ydp:Ag, 6ydw:Ag
3 7a5f:X6 316 348 0.8952 1.0000 0.9080 0.0 7a5g:X6, 7a5i:X6, 7a5k:X6, 3j9m:AX, 6nu2:AX, 6nu3:AX
4 7pnt:X 357 353 0.8385 0.8291 0.8385 0.0 7pnu:X, 7pnv:X, 7pnw:X
5 6xyw:Bw 337 337 0.2210 0.2315 0.2315 1.60e-12
6 8a22:Bw 349 222 0.1586 0.1605 0.2523 5.15e-09 8apn:Bw, 8apo:Bw
7 6yw5:XX 408 252 0.1530 0.1324 0.2143 7.92e-08 6ywe:XX, 6ywx:XX, 6ywy:XX
8 7pua:Cg 487 247 0.1700 0.1232 0.2429 1.73e-06 6hiv:Cg, 6hiw:Cg, 6hiz:Cg, 7pub:Cg, 6sg9:Cg, 6sgb:Cg
9 6z1p:Bw 662 80 0.0708 0.0378 0.3125 1.65e-05
10 7aor:r 465 156 0.1161 0.0882 0.2628 4.49e-04
11 7pkq:x 368 82 0.0567 0.0543 0.2439 0.006
12 6vzd:E 85 67 0.0680 0.2824 0.3582 0.27 6vyn:A, 6vyn:E, 6vyn:C, 6vyn:B, 6vyn:D, 6vyn:F, 6vyn:G, 6vyn:H, 6vzd:A, 6vzd:C, 6vzd:B
13 8om2:W 402 116 0.0737 0.0647 0.2241 0.33 8d8k:W, 8d8l:W, 5mrc:WW, 5mre:WW, 5mrf:WW, 8om3:W, 8om4:W
14 4o1w:A 79 59 0.0510 0.2278 0.3051 0.47 4o1w:D, 4o1w:B, 4o1w:C, 4o1w:E, 4o1w:F
15 5ngl:B 454 73 0.0652 0.0507 0.3151 0.75 5ngl:A, 5ngl:C
16 6ky3:A 353 137 0.0935 0.0935 0.2409 0.84
17 5gup:i 347 36 0.0397 0.0403 0.3889 1.8 7v2c:i, 7v2d:i, 7v2e:i, 7v2f:i, 7v2h:i, 7v2k:i, 7v2r:i, 7v30:i, 7v31:i, 7v32:i, 7v33:i, 7v3m:i, 7vbl:i, 7vbp:i, 7vc0:i, 7vwl:i, 7vxs:i, 7vy1:i, 7vy9:i, 7vye:i, 7vyg:i, 7vyi:i, 7vys:i, 7vz8:i, 7vzv:i, 7vzw:i, 7w00:i, 7w0h:i, 7w0r:i, 7w0y:i, 7w1o:i, 7w1p:i, 7w1t:i, 7w1u:i, 7w1v:i, 7w1z:i, 7w20:i, 7w2k:i, 7w2r:i, 7w2u:i, 7w2y:i, 7w31:i, 7w32:i, 7w35:i, 7w4c:i, 7w4d:i, 7w4e:i, 7w4f:i, 7w4g:i, 7w4j:i, 7w4k:i, 7w4l:i, 7w4m:i, 7w4n:i, 7w4q:i
18 5xtc:i 347 23 0.0283 0.0288 0.4348 7.0 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
19 7jgr:E 398 65 0.0595 0.0528 0.3231 7.1 7jgs:E, 7jk2:E, 7jk3:E, 7jk4:E, 7jk5:E, 7jk6:E
20 8flj:M 970 80 0.0567 0.0206 0.2500 7.4 8flj:N
21 8a3x:A 295 78 0.0652 0.0780 0.2949 7.9 8a3x:B, 8a3x:C, 8a3x:D, 8a5z:A, 8a5z:B
22 7fh4:A 140 49 0.0425 0.1071 0.3061 8.0 7fh4:B, 7fh9:A
23 6pdw:D 299 132 0.0793 0.0936 0.2121 9.1 6pdw:B, 6pdw:C, 6pdw:E, 6pdw:F, 6pdy:F, 6pdy:C, 6pdy:D, 6pdy:E, 6pdy:B, 6pe0:B, 6pe0:C, 6pe0:D, 6pe0:E, 6pe0:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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