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BioLiP
>protein
QYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRK
YVTTAMFKNFD

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2qrd:D 92 91 1.0000 0.9891 1.0000 2.98e-63 2qr1:B, 2qr1:D, 2qrc:B, 2qrc:D, 2qrd:B
2 6c9h:B 168 66 0.4066 0.2202 0.5606 5.66e-20 6e4t:B, 6e4u:B, 6e4w:B, 5kq5:B, 4qfr:B, 4qfs:B, 5t5t:B, 5ufu:B
3 7myj:D 187 66 0.4066 0.1979 0.5606 1.10e-19 6b1u:B, 6b1u:D, 8bik:B, 8bik:E, 6c9f:B, 6c9g:B, 6c9j:B, 4cfe:B, 4cfe:D, 4cff:B, 4cff:D, 5ezv:B, 5ezv:D, 5iso:B, 5iso:D, 7myj:B, 4yef:A, 4yef:B, 4yef:C, 4yef:D, 4yef:E, 4yef:F, 4yef:G, 1z0m:A, 1z0m:B, 1z0m:C, 1z0n:A, 1z0n:B, 1z0n:C, 4zhx:B, 4zhx:D
4 6b2e:B 193 66 0.3956 0.1865 0.5455 2.76e-18 4cfh:B, 4rer:B, 4yee:A, 4yee:G, 4yee:B, 4yee:C, 4yee:D, 4yee:N, 4yee:E, 4yee:F, 4yee:H, 4yee:I, 4yee:J, 4yee:K, 4yee:L, 4yee:M, 4yee:O, 4yee:P, 4yee:Q, 4yee:R
5 5ad1:A 290 57 0.2198 0.0690 0.3509 1.0 5a1j:A, 5a5d:A, 5a5v:A, 5adv:A, 5adv:B, 5adv:C, 5adw:A, 5adw:B, 5adw:C, 2chu:A, 2chu:B, 5lwh:A, 5oah:A, 5oah:B, 5od5:A, 5od5:C, 5tcy:A, 5tcy:B, 5tcy:C
6 8xfc:D 517 37 0.1538 0.0271 0.3784 1.7 8wdb:D
7 6jr9:A 269 45 0.1429 0.0483 0.2889 1.9 5c7y:A, 5c7y:B, 5c81:A, 5c81:B, 5c8x:A, 5c8x:B, 5c8z:A, 5c8z:B, 5ie4:A, 5ie4:B, 5ie5:A, 5ie5:B, 5ie6:A, 5ie6:B, 5ie7:A, 5ie7:B, 6jqz:A, 6jqz:B, 6jr2:A, 6jr2:B, 6jr5:A, 6jr5:B, 6jr9:B, 6jra:A, 6jra:B, 6jrb:A, 6jrb:B, 6jrc:A, 6jrc:B, 6jrd:A, 6jrd:B, 3wzm:A, 3wzm:B, 3wzm:C
8 1v10:A 487 47 0.1758 0.0329 0.3404 2.0
9 2xzl:A 756 67 0.2308 0.0278 0.3134 2.1
10 8hjo:B 440 23 0.1209 0.0250 0.4783 4.0 8hjf:A, 8hjf:B, 8hjg:A, 8hjg:B, 8hjh:A, 8hjh:B, 8hjk:A, 8hjl:A, 8hjl:B, 8hjn:A, 8hjn:B, 8hjo:A, 8hjp:A, 8hjp:B, 8j66:A
11 3orf:A 230 34 0.1319 0.0522 0.3529 4.3 3orf:B, 3orf:C, 3orf:D
12 7pkq:c 135 19 0.1099 0.0741 0.5263 4.3
13 6fnk:A 274 34 0.1099 0.0365 0.2941 5.3 4aw5:A, 4bb4:A, 6fni:A, 6fnj:A, 6fnj:B, 6fnm:A, 2vwu:A, 2vwv:A, 2vww:A, 2vwx:A, 2vwy:A, 2vwz:A, 2vx0:A, 2vx1:A, 2x9f:A, 2xvd:A, 2yn8:A, 2yn8:B, 3zew:A, 3zew:B
14 5ue8:A 847 43 0.1319 0.0142 0.2791 5.3 5ue8:B, 1y8f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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