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BioLiP
>protein
QYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYK
TEAAPFDQATGGYHGGEKSVTQQVDSAITLEIGHTGAQIFNSICECAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGNNV
EKEKAAAAIDKTNRGLKNSLHNVLEVRWELEWFLELLSAK

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5kay:A 201 200 1.0000 0.9950 1.0000 1.14e-149 5kay:B
2 1oxy:A 573 72 0.1050 0.0366 0.2917 0.69
3 6wo1:A 551 67 0.0900 0.0327 0.2687 0.74
4 3gdv:B 284 36 0.0700 0.0493 0.3889 0.77 3gdu:B, 2r3y:A, 4rqz:A, 4rqz:B, 4rqz:C
5 5k2o:A 585 59 0.0850 0.0291 0.2881 1.3 3e9y:A, 3ea4:A, 8et4:A, 8et5:A, 5k3s:A, 5k6q:A, 5k6r:A, 5k6t:A, 7stq:A, 7tzz:A, 7u1d:A, 7u1u:A, 7u25:A, 6u9h:A, 6u9h:B, 6u9h:H, 6u9h:I, 6u9h:L, 6u9h:M, 6u9h:P, 6u9h:Q, 6vz8:E, 6vz8:I, 6vz8:M, 6vz8:Q, 5wj1:A, 1ybh:A, 1yhy:A, 1yhz:A, 1yi0:A, 1yi1:A, 1z8n:A
6 4o5v:A 213 38 0.0700 0.0657 0.3684 5.3 4o6j:A
7 8qca:B 756 41 0.0800 0.0212 0.3902 6.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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