Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QVTKVDCPVCGVNIPESHINKHLDSCLSREEKKESLRSSVHKR

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5vf0:B 43 43 1.0000 1.0000 1.0000 8.60e-26 2mre:B, 2mrf:A
2 2lo2:A 38 29 0.2093 0.2368 0.3103 0.32
3 5ds0:C 359 37 0.2326 0.0279 0.2703 2.3 5ds0:A, 5ds0:B, 5ds0:D, 5ds0:E, 5ds0:F, 5ds0:G, 5ds0:H, 5ds0:I, 5ds0:J, 5ds0:K, 5ds0:L
4 3pih:A 836 10 0.1628 0.0084 0.7000 2.5
5 6o7i:A 741 14 0.1628 0.0094 0.5000 2.7
6 6muu:A 780 14 0.1628 0.0090 0.5000 2.7 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A
7 3mhh:C 93 25 0.2093 0.0968 0.3600 3.1 6aqr:C, 4fk5:C, 3kjl:E, 3kjl:H, 3m99:B, 3mhs:C, 6t9l:M, 4wa6:C, 4zux:W, 4zux:b, 4zux:g, 4zux:l
8 4orh:H 142 26 0.1860 0.0563 0.3077 3.9 4ayc:A, 4ayc:B, 4orh:C, 4orh:G, 4orh:K, 4orh:L, 4whv:C, 4whv:D, 4whv:I, 4whv:J
9 6z1p:Bi 626 27 0.2326 0.0160 0.3704 4.8
10 2egp:A 79 22 0.2326 0.1266 0.4545 5.5
11 2l7x:A 77 28 0.2093 0.1169 0.3214 5.8
12 1dvf:D 121 17 0.1628 0.0579 0.4118 6.9
13 2vvm:A 481 32 0.2558 0.0229 0.3438 8.0 2vvl:A, 2vvl:B, 2vvl:C, 2vvl:D, 2vvl:E, 2vvl:F, 2vvl:G, 2vvl:H, 2vvm:B, 3zdn:A, 3zdn:B, 3zdn:C, 3zdn:D
14 8k0k:B 248 39 0.3256 0.0565 0.3590 8.2 8k22:C, 8k23:C, 8k23:c, 8k24:c, 8k24:C, 8k27:B, 8k28:B, 8k29:B, 7wwv:B
15 6rfl:I 773 9 0.1628 0.0091 0.7778 8.4 7aof:I, 8c8h:I

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218