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BioLiP
>protein
QVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8x19:V 204 74 1.0000 0.3627 1.0000 7.87e-50 3hm5:A, 4iej:A, 8x15:V, 8x1c:V
2 3k6x:A 322 41 0.1622 0.0373 0.2927 1.1 3cfx:A, 3cfx:B, 3k6w:A, 3k6x:B
3 7ch3:A 469 39 0.1622 0.0256 0.3077 2.1
4 7mq8:SQ 187 79 0.2568 0.1016 0.2405 2.1 7mq9:SQ
5 7ch3:B 495 39 0.1622 0.0242 0.3077 2.8 7ch3:C, 7ch3:D, 7ch3:E, 7ch3:I, 7ch3:F, 7ch3:G, 7ch3:H, 7ch3:J, 7ch3:K, 7ch3:L, 7cwv:A, 7cwv:B, 7cwv:C, 7cwv:D, 7cwv:E, 7cwv:F, 7cwv:G, 7cwv:H, 7cwv:I, 7cwv:J, 7cwv:K, 7cwv:L
6 8sr6:A 451 59 0.2162 0.0355 0.2712 2.8 5czy:A, 8swi:A
7 8fgw:A 1081 23 0.1351 0.0093 0.4348 4.2
8 1sli:A 679 31 0.1622 0.0177 0.3871 6.4 2sli:A, 3sli:A, 4sli:A
9 5t99:A 757 32 0.1892 0.0185 0.4375 6.9 5t99:B
10 3qn3:A 415 22 0.1486 0.0265 0.5000 7.5 3qn3:B, 3qn3:C, 3qn3:D
11 8b9s:A 259 37 0.1622 0.0463 0.3243 8.5 8b9s:B, 8b9s:C, 8b9s:E, 8b9s:F, 7q4h:A, 7q4h:B, 7q4j:A, 7q4j:B
12 6bxn:A 294 27 0.1081 0.0272 0.2963 9.8
13 6bxo:A 321 27 0.1081 0.0249 0.2963 9.8 6bxm:A, 6bxm:B, 6bxn:B, 6bxo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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