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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QSPIFLTPVFKEKIWGGTALRDRFGYSIPSESTGECWAISAHPKGPSTVANGPYKGKTLIELWEEHREVFGGVEGDRFPL
LTKLLDVKEDTSIKVHPDDYYAGENEEGELGKTECWYIIDCKENAEIIYGHTARSKTELVTMINSGDWEGLLRRIKIKPG
DFYYVPSGTLHALCKGALVLETQQNSDATYRVYDYDRLDSNGSPRELHFAKAVNAATVPHVDGYIDESTESRKGITIKTF
VQGEYFSVYKWDINGEAEMAQDESFLICSVIEGSGLLKYEDKTCPLKKGDHFILPAQMPDFTIKGTCTLIVSHI

The query sequence (length=314) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1qwr:A 315 314 1.0000 0.9968 1.0000 0.0 1qwr:B
2 1zx5:A 300 314 0.2580 0.2700 0.2580 9.53e-16
3 3h1m:A 392 107 0.1083 0.0867 0.3178 0.005 3h1w:A, 3h1y:A, 5zvr:A, 5zvu:A, 5zvx:A
4 3h1m:A 392 161 0.1146 0.0918 0.2236 0.77 3h1w:A, 3h1y:A, 5zvr:A, 5zvu:A, 5zvx:A
5 3nl1:A 366 33 0.0382 0.0328 0.3636 1.2 4fag:A, 4fah:A, 4fbf:A, 3njz:A, 3nkt:A, 3nst:A, 3nvc:A, 3nw4:A, 2phd:A, 2phd:B, 2phd:C, 2phd:D
6 2c5s:A 372 179 0.1338 0.1129 0.2346 4.2
7 2h0v:A 335 20 0.0287 0.0269 0.4500 5.7 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
8 6jt5:A 409 87 0.0860 0.0660 0.3103 7.8 6jwf:A, 6jwf:B
9 4bu2:A 379 162 0.1115 0.0923 0.2160 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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