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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCFY
NLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDAD
ACNATNWIEYMFNKDNGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIVCGPKPQPPPPPAPWTI
LGLDAMYVIMWITYMAFLLVFFGAFFAVWCYRKPVSAAFEGCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLVFVR
VTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIEN
ITASYDNETVTLQDICLAPLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDP
CLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDE
LNRESDSDVFTVVISYAIMFLYISLALGHVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVD
NIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQITCFV
SLLGLDIKRQEKNRSCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSIS
QYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDYFDWVKPQSSCCRVD
NITDQFCNASVVDPACVRCRPLTPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMT
YHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAIFLVTMVLLGCE
LWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFS
GITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFLPVLLSYIGPSV

The query sequence (length=1175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6w5r:A 1194 1194 1.0000 0.9841 0.9841 0.0 3gki:A, 3gkj:A, 6w5s:A, 6w5t:A, 6w5u:A, 6w5v:A
2 6uox:A 1161 1177 0.9855 0.9974 0.9839 0.0
3 3jd8:A 1133 1179 0.9489 0.9841 0.9457 0.0
4 6v3f:A 1234 1222 0.4136 0.3938 0.3977 0.0 6v3h:A
5 7df8:A 918 913 0.3438 0.4401 0.4425 0.0
6 7dfw:A 957 938 0.3464 0.4253 0.4339 0.0 7n4u:A, 7n4u:B, 7n4v:A, 7n4v:B, 7n4x:A
7 7dfz:A 897 911 0.3362 0.4404 0.4336 0.0
8 8qec:A 1101 1181 0.3294 0.3515 0.3277 1.33e-170 9f40:A, 9f40:D, 9f40:B, 9f40:C, 9f41:C, 9f41:D, 9f41:A, 9f41:B, 8qeb:A, 8qed:A, 8qee:A, 6r4l:A
9 6rmg:A 1026 704 0.1660 0.1901 0.2770 7.36e-58 6dmb:A, 6dmy:A, 7k65:A, 6mg8:A, 6n7g:A, 6n7g:B, 6n7g:D, 6n7g:E, 6n7h:A, 6n7h:B, 6n7k:A, 6n7k:B, 6n7k:D, 6n7k:E, 6rtw:A, 6rvd:A, 6rvd:B, 7v6y:A, 7v6z:A
10 7rhq:A 974 695 0.1609 0.1940 0.2719 6.01e-53 7rhr:A
11 7etw:B 483 313 0.0655 0.1594 0.2460 9.02e-16
12 6xe6:A 826 207 0.0426 0.0605 0.2415 5.11e-08
13 6xe6:A 826 160 0.0298 0.0424 0.2188 0.045
14 6tbu:A 842 640 0.1072 0.1496 0.1969 7.87e-08
15 7e2i:D 907 211 0.0391 0.0507 0.2180 1.01e-06 7e2g:D, 7e2h:E
16 7e2i:D 907 178 0.0340 0.0441 0.2247 0.056 7e2g:D, 7e2h:E
17 7rpk:A 953 187 0.0374 0.0462 0.2353 3.46e-06 7rph:A, 7rpi:A, 7rpj:A
18 7rpk:A 953 160 0.0306 0.0378 0.2250 0.002 7rph:A, 7rpi:A, 7rpj:A
19 6iia:B 1030 199 0.0400 0.0456 0.2362 0.015 6iia:E, 3w9j:B, 3w9j:E
20 8djk:A 245 160 0.0306 0.1469 0.2250 0.035 8djm:A
21 6ei3:A 511 69 0.0187 0.0431 0.3188 0.50
22 7w7g:B 1711 51 0.0153 0.0105 0.3529 0.52
23 8hn2:A 110 36 0.0119 0.1273 0.3889 4.5 8hn2:B
24 8dku:A 395 179 0.0332 0.0987 0.2179 8.8 8dky:A, 8dky:B, 8dn8:A, 8dn8:C, 8dnc:A, 8dne:A, 8dne:C, 8dou:A, 8dou:C, 7k2t:A, 7k2t:C, 6m96:A
25 7xkw:A 499 66 0.0153 0.0361 0.2727 9.5
26 3b2g:A 98 28 0.0085 0.1020 0.3571 9.6 3b2g:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218