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BioLiP
>protein
QSAKYHRLNLQNPAAAPFLESYKKAITVMLQLPPSDARNWYRNAFIHTLDCPHGNWWFVVWHRGYTGWFERTVRELSGDP
NFAFPYWDWTALPQVPDSFFNGVLDPNNPAFIASYNEFYSQLSNPMSALWNSFSTAQLQQMRNRGFQSVNDVWQAVRDSP
MFFPRGRARTLTRQNPGFDATTRRAVSIGTIRNALAPTDFITFGSGKTANHSESATQGILESQPHNNVHNNIGGFMQDLL
SPTDPVFFAHHSNIDRLWDVWTRKQQRLGLPTLPTGANLPLWANEPFLFFIGPDGKPVAKNKAGDYATIGDFDYNYEPGS
GEAV

The query sequence (length=324) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bbq:A 324 324 1.0000 1.0000 1.0000 0.0 8bbq:B, 8bbr:A, 8bbr:B
2 5ce9:A 339 302 0.2407 0.2301 0.2583 2.59e-19 5ce9:B
3 4z11:A 513 329 0.2593 0.1637 0.2553 5.92e-18 4z0y:A, 4z0y:B, 4z0y:D, 4z0y:C, 4z0z:A, 4z0z:B, 4z0z:C, 4z0z:D, 4z10:A, 4z10:C, 4z10:B, 4z10:D, 4z10:E, 4z10:F, 4z11:B, 4z11:C, 4z11:D, 4z12:A, 4z12:B, 4z13:A, 4z13:B, 4z14:D, 4z14:B, 4z14:H, 4z14:F, 4z14:C, 4z14:E, 4z14:G, 4z14:A
4 6els:A 459 316 0.2469 0.1743 0.2532 1.18e-16 6elt:A, 6elv:A
5 5zre:B 474 282 0.2037 0.1392 0.2340 7.08e-13 5zre:A, 5zre:C
6 6hqi:A 444 334 0.2438 0.1779 0.2365 1.14e-11
7 4yd9:A 1656 274 0.2284 0.0447 0.2701 1.45e-11 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
8 4yd9:A 1656 70 0.0864 0.0169 0.4000 4.13e-06 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
9 4yd9:A 1656 235 0.1914 0.0374 0.2638 7.41e-05 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
10 4yd9:A 1656 71 0.0802 0.0157 0.3662 0.001 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
11 4yd9:A 1656 60 0.0648 0.0127 0.3500 0.14 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
12 4yd9:B 825 276 0.2130 0.0836 0.2500 1.10e-10 4yd9:E, 4yd9:H, 4yd9:K, 4yd9:N, 4yd9:Q, 4yd9:T, 4yd9:W, 4yd9:Z, 4yd9:c
13 4yd9:B 825 251 0.2006 0.0788 0.2590 1.26e-08 4yd9:E, 4yd9:H, 4yd9:K, 4yd9:N, 4yd9:Q, 4yd9:T, 4yd9:W, 4yd9:Z, 4yd9:c
14 1bug:A 336 86 0.0864 0.0833 0.3256 1.67e-10 1bug:B
15 1bug:A 336 129 0.1142 0.1101 0.2868 0.001 1bug:B
16 6z1s:A 381 287 0.2284 0.1942 0.2578 3.96e-10
17 8hpi:A 289 241 0.2130 0.2388 0.2863 1.91e-09 4d87:A, 4d87:B, 6ei4:A, 6ei4:B, 4hd4:A, 4hd4:B, 4hd6:A, 4hd6:B, 4hd7:A, 4hd7:B, 8hpi:B, 5i38:A, 5i38:B, 5i3a:A, 5i3a:B, 5i3b:A, 5i3b:B, 4j6t:A, 4j6t:B, 4j6v:A, 4j6v:B, 3nm8:A, 3nm8:B, 3npy:A, 3npy:B, 3nq0:A, 3nq0:B, 3nq1:A, 3nq1:B, 3nq5:A, 3nq5:B, 3ntm:A, 3ntm:B, 5oae:A, 5oae:B, 4p6r:A, 4p6r:B, 4p6s:A, 4p6s:B, 4p6t:A, 4p6t:B, 6qxd:A, 6qxd:B
18 5zrd:A 534 259 0.1790 0.1086 0.2239 5.92e-09 5zrd:B, 5zrd:C, 5zrd:D
19 4bed:A 1664 225 0.1883 0.0367 0.2711 1.32e-08 4bed:C
20 4bed:A 1664 230 0.1790 0.0349 0.2522 2.81e-06 4bed:C
21 4bed:A 1664 99 0.1049 0.0204 0.3434 2.93e-04 4bed:C
22 4bed:A 1664 47 0.0586 0.0114 0.4043 0.010 4bed:C
23 4bed:A 1664 40 0.0525 0.0102 0.4250 0.21 4bed:C
24 4bed:A 1664 67 0.0586 0.0114 0.2836 2.6 4bed:C
25 4bed:B 1734 229 0.1790 0.0334 0.2533 2.55e-08 4bed:D, 3qjo:A, 3qjo:B
26 4bed:B 1734 226 0.1636 0.0306 0.2345 2.07e-05 4bed:D, 3qjo:A, 3qjo:B
27 4bed:B 1734 52 0.0679 0.0127 0.4231 4.87e-04 4bed:D, 3qjo:A, 3qjo:B
28 4bed:B 1734 51 0.0586 0.0110 0.3725 0.007 4bed:D, 3qjo:A, 3qjo:B
29 4bed:B 1734 77 0.0895 0.0167 0.3766 0.019 4bed:D, 3qjo:A, 3qjo:B
30 6j2u:B 273 53 0.0772 0.0916 0.4717 1.24e-06
31 6j2u:B 273 33 0.0432 0.0513 0.4242 0.16
32 9ey8:DA 450 262 0.1852 0.1333 0.2290 1.36e-06 9ey5:A, 9ey6:A, 9ey7:A, 9ey8:AA, 9ey8:BA, 9ey8:CA, 5m8l:A, 5m8l:C, 5m8l:B, 5m8l:D, 5m8m:A, 5m8m:B, 5m8m:C, 5m8m:D, 5m8n:A, 5m8n:C, 5m8n:D, 5m8n:B, 5m8o:B, 5m8o:C, 5m8o:A, 5m8o:D, 5m8p:A, 5m8p:B, 5m8p:C, 5m8p:D, 5m8q:A, 5m8q:C, 5m8q:D, 5m8q:B, 5m8r:A, 5m8r:B, 5m8r:C, 5m8r:D, 5m8s:A, 5m8s:B, 5m8s:D, 5m8s:C, 5m8t:A, 5m8t:B, 5m8t:C, 5m8t:D
33 5z0f:A 279 41 0.0617 0.0717 0.4878 2.11e-06 2ahk:A, 2ahl:A, 3aws:A, 3awt:A, 3awu:A, 3awv:A, 3aww:A, 3awx:A, 3awy:A, 3awz:A, 3ax0:A, 7cit:A, 7ciy:A, 1wx2:A, 1wx4:A, 5z0d:A, 5z0e:A, 5z0g:A, 5z0h:A, 5z0i:A, 5z0j:A, 5z0k:A, 5z0l:A, 5z0m:A, 2zmx:A, 2zmy:A, 2zmz:A, 2zwd:A, 2zwe:A, 2zwf:A, 2zwg:A
34 5z0f:A 279 43 0.0463 0.0538 0.3488 1.5 2ahk:A, 2ahl:A, 3aws:A, 3awt:A, 3awu:A, 3awv:A, 3aww:A, 3awx:A, 3awy:A, 3awz:A, 3ax0:A, 7cit:A, 7ciy:A, 1wx2:A, 1wx4:A, 5z0d:A, 5z0e:A, 5z0g:A, 5z0h:A, 5z0i:A, 5z0j:A, 5z0k:A, 5z0l:A, 5z0m:A, 2zmx:A, 2zmy:A, 2zmz:A, 2zwd:A, 2zwe:A, 2zwf:A, 2zwg:A
35 6jua:A 533 309 0.2160 0.1313 0.2265 4.21e-06 6jub:A, 6jud:A
36 3w6w:A 583 329 0.2284 0.1269 0.2249 4.77e-06 6ju7:A, 6ju7:B, 6ju8:A, 6ju8:B, 6ju9:A, 6ju9:B
37 6ju4:B 560 325 0.2315 0.1339 0.2308 7.58e-06 6ju4:A, 6ju5:A, 6ju5:B, 6jua:B, 6jub:B, 6juc:A, 6juc:B, 6jud:B, 3w6w:B
38 1js8:A 382 101 0.1049 0.0890 0.3366 1.31e-05 1js8:B
39 1js8:A 382 40 0.0463 0.0393 0.3750 0.66 1js8:B
40 2y9w:A 391 363 0.2500 0.2072 0.2231 2.01e-05 2y9w:B, 2y9x:A, 2y9x:B, 2y9x:C, 2y9x:D
41 4yd9:L 366 52 0.0679 0.0601 0.4231 3.90e-05 4yd9:C, 4yd9:a, 4yd9:F, 4yd9:R, 4yd9:I, 4yd9:O, 4yd9:U, 4yd9:X, 4yd9:d
42 4yd9:L 366 40 0.0463 0.0410 0.3750 0.18 4yd9:C, 4yd9:a, 4yd9:F, 4yd9:R, 4yd9:I, 4yd9:O, 4yd9:U, 4yd9:X, 4yd9:d
43 1lnl:A 408 280 0.2099 0.1667 0.2429 1.15e-04 1lnl:B, 1lnl:C
44 8tnv:A 393 51 0.0679 0.0560 0.4314 5.04e-04 8tnv:B
45 8tnv:A 393 47 0.0525 0.0433 0.3617 2.2 8tnv:B
46 5m6b:C 514 275 0.1790 0.1128 0.2109 0.010
47 4oua:B 557 243 0.1698 0.0987 0.2263 0.036 5m6b:B, 5m6b:A, 5m6b:D, 4oua:A
48 4j3r:A 372 234 0.1667 0.1452 0.2308 0.45 6gsg:A, 4j3p:A, 4j3q:A, 4j3q:B, 5or3:A, 5or3:B, 5or3:C, 5or3:D, 5or4:A, 5or4:B, 5or4:C, 5or4:D
49 5dfa:A 685 31 0.0340 0.0161 0.3548 1.7 5dfa:B, 5dfa:C, 4oif:A, 4oif:B, 4oif:C
50 2ak5:B 64 48 0.0494 0.2500 0.3333 3.1 2df6:A, 2df6:B
51 7e78:A 562 21 0.0309 0.0178 0.4762 4.6 7e78:C
52 8ki1:A 181 42 0.0463 0.0829 0.3571 6.8 8ki0:A, 8ki0:B, 8ki1:B
53 5dgk:A 519 34 0.0432 0.0270 0.4118 8.1 5dgk:B
54 8q84:L 61 52 0.0401 0.2131 0.2500 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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