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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QQVSVRFQVHYVTSTDVQFIAVTGDHECLGRWNTYIPLHYNKDGFWSHSIFLPADTVVEWKFVLVENGGVTRWEECSNRF
LETGHEDKVVHAWWGIH

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8x8k:C 98 97 1.0000 0.9898 1.0000 1.10e-69 8x8k:A, 8x8k:B, 8x8k:D
2 1d7f:A 686 88 0.2990 0.0423 0.3295 4.30e-06 1d7f:B, 1ded:A, 1ded:B, 1i75:A, 1i75:B, 1pam:A, 1pam:B, 1ukq:A, 1ukq:B, 1uks:A, 1uks:B, 1ukt:A, 1ukt:B, 1v3j:A, 1v3j:B, 1v3k:A, 1v3k:B, 1v3l:A, 1v3l:B, 1v3m:A, 1v3m:B
3 4jcm:A 669 84 0.2680 0.0389 0.3095 3.08e-05
4 1cdg:A 686 83 0.2990 0.0423 0.3494 3.82e-05 1cgv:A, 1cgw:A, 1cgx:A, 1cgy:A, 1cxe:A, 1cxf:A, 1cxh:A, 1cxi:A, 1cxk:A, 1cxl:A, 2cxg:A, 1d3c:A, 2dij:A, 1dtu:A, 1eo5:A, 1eo7:A, 1kck:A, 1kcl:A, 1ot1:A, 1ot2:A, 1pez:A, 1pj9:A, 1tcm:A, 1tcm:B
5 1cyg:A 680 88 0.2887 0.0412 0.3182 1.22e-04
6 1a47:A 683 83 0.2577 0.0366 0.3012 2.66e-04 3bmv:A, 3bmw:A, 1ciu:A
7 1cgt:A 684 89 0.2990 0.0424 0.3258 2.82e-04 1cgu:A, 3cgt:A, 4cgt:A, 5cgt:A, 6cgt:A, 7cgt:A, 8cgt:A, 9cgt:A
8 1ac0:A 108 83 0.2784 0.2500 0.3253 0.001 1acz:A
9 6aij:A 687 88 0.2784 0.0393 0.3068 0.004 4jcl:A, 6l2h:A, 3wms:A
10 2vn4:A 599 82 0.2474 0.0401 0.2927 0.005 2vn7:A
11 1b90:A 516 71 0.2268 0.0426 0.3099 0.027 1b9z:A, 5bca:A, 5bca:B, 5bca:C, 5bca:D, 1itc:A, 1j0y:A, 1j0y:B, 1j0y:C, 1j0y:D, 1j0z:A, 1j0z:B, 1j0z:C, 1j0z:D, 1j10:A, 1j10:B, 1j10:C, 1j10:D, 1j11:A, 1j11:B, 1j11:C, 1j11:D, 1j12:A, 1j12:B, 1j12:C, 1j12:D, 1j18:A, 1vem:A, 1ven:A, 1veo:A, 1vep:A, 8zrz:A
12 1qho:A 686 92 0.2680 0.0379 0.2826 0.075 1qhp:A
13 8rpl:B 630 75 0.2062 0.0317 0.2667 0.94 8rpk:A, 8rpk:B, 8rpk:C, 8rpk:D, 8rpl:A, 8rpl:C, 8rpl:D
14 3hna:A 280 50 0.1340 0.0464 0.2600 3.2 3fpd:A, 3fpd:B, 3hna:B, 4i51:A, 4i51:B, 2igq:A, 2igq:B, 6mbo:A, 6mbo:B, 6mbp:A, 6mbp:B, 3mo0:A, 3mo0:B, 3mo2:A, 3mo2:B, 3mo2:C, 3mo2:D, 3mo5:A, 3mo5:B, 3mo5:C, 3mo5:D, 2rfi:A, 2rfi:B, 3sw9:A, 3sw9:B, 3swc:A, 3swc:B, 7t7m:A, 7t7m:B, 7t7m:C, 7t7m:D, 5ttg:A, 5ttg:B, 5tuz:A, 5tuz:B, 5v9j:A, 5v9j:B, 5vsd:A, 5vsd:B, 5vsf:A, 5vsf:B, 8xpt:A, 8xpt:B, 8xpt:C, 8xpt:D
15 2x98:A 430 38 0.1443 0.0326 0.3684 4.1 2x98:B
16 2kdz:A 107 79 0.2062 0.1869 0.2532 5.5
17 1ov8:A 139 27 0.1340 0.0935 0.4815 6.9 1ov8:B, 1ov8:C, 1ov8:D, 1qhq:A
18 3ogd:A 288 47 0.1134 0.0382 0.2340 8.1 3cvs:A, 3cvs:B, 3cvs:C, 3cvs:D, 3cvt:A, 3cvt:B, 3cvt:C, 3cvt:D, 3cw7:A, 3cw7:B, 3cw7:C, 3cw7:D, 3cwa:A, 3cwa:B, 3cwa:C, 3cwa:D, 3cws:A, 3cws:B, 3cws:C, 3cws:D, 3cwt:A, 3cwt:B, 3cwt:C, 3cwt:D, 3cwu:A, 3cwu:B, 3cwu:C, 3cwu:D, 3d4v:A, 3d4v:B, 3d4v:C, 3d4v:D, 1diz:B, 1diz:A, 3oh6:A, 3oh9:A, 1pvs:A, 1pvs:B
19 8oxm:A 2748 80 0.1856 0.0066 0.2250 8.1 8oxm:B
20 7sic:A 2773 80 0.1856 0.0065 0.2250 8.1 8oxo:A, 8oxo:B, 8oxp:A, 8oxp:B, 7sic:B, 7sid:A, 7sid:C
21 7ni5:A 2791 80 0.1856 0.0064 0.2250 8.2 7ni4:A, 7ni4:B, 7ni5:B, 7ni6:A, 7ni6:B, 8oxq:A, 8oxq:B
22 6b58:C 544 20 0.0928 0.0165 0.4500 8.6 6b58:A
23 5vpn:E 585 20 0.0928 0.0154 0.4500 8.7 6awf:A, 2b76:A, 2b76:M, 1kf6:A, 1kf6:M, 1kfy:A, 1kfy:M, 4kx6:A, 4kx6:M, 1l0v:A, 1l0v:M, 3p4p:A, 3p4p:M, 3p4q:A, 3p4q:M, 3p4r:A, 3p4r:M, 3p4s:A, 3p4s:M, 5vpn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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