Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QQPERGKIYDRNGKVLAEDVERYKLVAVIDKKASANSKKPRHVVDKKETAKKLSTVIDMKPEEIEKRLSQKKAFQIEFGR
KGTNLTYQDKLKIEKMNLPGISLLPETERFYPNGNFASHLIGRAQKNPDTGELKGALGVEKIFDSYLSGKRGDDVHLTID
SNIQVFVEEALDGMVERYQPKDLFAVVMDAKTGEILAYSQRPTFNPETGKDFGKKWANDLYQNTYEPGSTFKSYGLAAAI
QEGAFDPDKKYKSGHRDIMGSRISDWNRVGWGEIPMSLGFTYSSNTLMMHLQDLVGADKMKSWYERFGFGKSTKGMFDGE
APGQIGWSNELQQKTSSFGQSTTVTPVQMLQAQSAFFNDGNMLKPWFVNSVENPVSKRQFYKGQKQIAGKPITKDTAEKV
EKQLDLVVNSKKSHAANYRIDGYEVEGKTGTAQVAAPNGGGYVKGPNPYFVSFMGDAPKKNPKVIVYAGMSLAQKNDQEA
YELGVSKAFKPIMENTLKYLNVGK

The query sequence (length=504) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8vbu:A 505 504 1.0000 0.9980 1.0000 0.0 7o4a:BBB, 7o4b:A, 7o4b:C, 8vbu:B, 8vbv:A, 8vbv:B, 8vbw:A, 8vbw:B
2 7ok9:B 525 523 0.9901 0.9505 0.9541 0.0 7o4a:AAA, 7ok9:A, 7ok9:E, 7ok9:C, 7ok9:G, 7ok9:H, 7ok9:I, 7ok9:D, 7ok9:F, 7ok9:J
3 5oj1:A 675 536 0.3571 0.2667 0.3358 7.09e-77 5oiz:A, 2z2m:B, 2z2m:E, 2zc3:B, 2zc3:E, 2zc4:B, 2zc4:E
4 5oj0:A 658 523 0.3492 0.2675 0.3365 2.60e-73 1qmf:A
5 1pyy:A 607 509 0.3333 0.2768 0.3301 7.38e-69
6 7rcz:A 511 539 0.3274 0.3229 0.3061 7.30e-52 7rcz:B
7 7onw:A 485 510 0.2778 0.2887 0.2745 1.01e-39 8gpw:A, 8gpw:B, 6i1i:A, 7onn:A, 8rtz:AAA
8 6syn:A 471 511 0.2698 0.2887 0.2661 2.22e-39
9 7atm:A 478 513 0.2599 0.2741 0.2554 2.64e-33 7kiv:A, 7kiw:A, 7lc4:A, 7ly1:A, 3pbo:A
10 7zg8:AAA 525 486 0.2599 0.2495 0.2695 4.25e-33 7zg8:BBB
11 4kqq:A 520 533 0.2639 0.2558 0.2495 5.94e-32 7ato:A, 7atw:A, 7atx:A, 7au0:A, 7au1:A, 7au8:A, 7au9:A, 7aub:A, 7auh:A, 5df7:A, 5df7:B, 5df8:A, 5df8:B, 5df9:A, 4fsf:A, 6hr6:A, 6hr9:A, 6i1e:A, 7jwl:A, 7kit:A, 4kqo:A, 4kqo:B, 4kqq:B, 4kqr:A, 4kqr:B, 4l0l:A, 3ocl:A, 3ocn:A, 7onk:A, 7onk:B, 4ool:A, 4oom:A, 3pbq:A, 3pbr:A, 3pbs:A, 3pbt:A, 6r3x:A, 6r42:A, 6un1:A, 6un3:A, 6vje:A, 6vot:A, 4wej:A, 4wek:A, 4wel:A, 6y6u:A, 6y6z:A
12 6kgw:A 452 381 0.2103 0.2345 0.2782 5.82e-30 6kgs:A, 6kgt:A, 6kgu:A, 6kgv:A
13 6tix:BBB 533 442 0.2083 0.1970 0.2376 7.68e-28 6tix:AAA
14 4r1g:B 419 382 0.2143 0.2578 0.2827 2.05e-27 4n1x:A, 4n1x:B, 4qjg:A, 4qjg:B, 4r0q:A, 4r0q:B, 4r1g:A, 4r23:A, 4r23:B, 4r3j:A, 4r3j:B, 4ra7:A, 4ra7:B
15 6g9f:A 539 505 0.2401 0.2245 0.2396 3.32e-25 6g9s:A
16 6p55:B 327 354 0.1964 0.3028 0.2797 3.38e-25 6p52:A, 6p53:B, 6p54:A, 6p54:B, 6p55:A, 6xqv:A, 6xqv:B
17 4ovd:A 422 389 0.2123 0.2536 0.2751 1.56e-23
18 4ovd:A 422 20 0.0238 0.0284 0.6000 6.5
19 8veq:A 325 351 0.1984 0.3077 0.2849 3.41e-23 6vbd:A, 8ven:A, 8vep:A
20 7kis:A 458 498 0.2202 0.2424 0.2229 2.21e-19 7kis:B
21 7rcy:A 828 440 0.2183 0.1329 0.2500 2.26e-18 7rcw:A
22 7rcx:A 811 433 0.2123 0.1319 0.2471 6.73e-18
23 7rd0:A 482 411 0.2222 0.2324 0.2725 4.94e-17
24 8yjx:A 558 502 0.2460 0.2222 0.2470 1.45e-16
25 6i1f:A 343 317 0.1627 0.2391 0.2587 1.34e-15 6i1f:B, 6i1g:A, 6i1g:B, 6i1h:A, 6i1h:B
26 6mkh:A 445 394 0.1944 0.2202 0.2487 2.30e-14 6bsr:A, 6mki:A
27 8f3i:A 641 499 0.2242 0.1763 0.2265 1.63e-13 8f3g:A, 8f3l:A, 8f3n:A, 8f3p:A, 8f3s:A, 8f3u:A, 8f3w:A, 8f3y:A, 6g88:A, 6mkf:A, 6mkg:A
28 6pl6:B 577 429 0.2024 0.1768 0.2378 6.57e-13
29 3upp:A 445 352 0.1766 0.2000 0.2528 3.20e-12 3upn:A, 3upn:B, 3upo:A, 3upo:B, 3upp:B
30 8c5w:A 634 363 0.1845 0.1467 0.2562 1.00e-11 8c5o:A
31 8c5w:A 634 74 0.0496 0.0394 0.3378 0.008 8c5o:A
32 4cjn:A 642 560 0.2659 0.2087 0.2393 2.88e-11 4bl3:A, 4bl3:B, 4cjn:B, 4cpk:A, 4cpk:B, 4dki:A, 4dki:B, 6h5o:B, 5m18:A, 5m18:B, 5m19:A, 5m19:B, 5m1a:A, 5m1a:B, 1mwt:A, 1mwt:B, 1mwu:A, 1mwu:B, 6q9n:A, 3zfz:A, 3zfz:B, 3zg0:A, 3zg0:B, 3zg5:A, 3zg5:B
33 6g88:C 597 386 0.1726 0.1457 0.2254 3.26e-11 6g88:B
34 8yjx:B 490 527 0.2421 0.2490 0.2315 2.14e-10
35 3vsl:A 631 359 0.1885 0.1506 0.2646 1.18e-08 3vsl:B
36 3vsl:A 631 74 0.0476 0.0380 0.3243 0.036 3vsl:B
37 3zg8:B 458 365 0.1766 0.1943 0.2438 3.00e-07 3zg9:B, 3zga:B
38 2wad:C 607 261 0.1131 0.0939 0.2184 3.94e-07 2wad:A, 2wae:A
39 2wad:C 607 66 0.0437 0.0362 0.3333 2.0 2wad:A, 2wae:A
40 6h5o:A 598 549 0.2599 0.2191 0.2386 1.51e-06
41 3ue1:A 604 233 0.1091 0.0911 0.2361 0.002 3udi:A, 3udi:B, 3udx:A, 3udx:B, 3ue0:A, 3ue0:B, 3ue1:B
42 4oon:A 502 212 0.0952 0.0956 0.2264 0.007
43 7u4h:A 576 267 0.1190 0.1042 0.2247 0.067 7u4h:B
44 5thm:A 520 190 0.0972 0.0942 0.2579 0.83
45 2v2f:F 366 313 0.1270 0.1749 0.2045 1.6
46 1gqy:B 469 59 0.0397 0.0426 0.3390 1.7 1gqy:A, 1p31:A, 1p31:B, 1p3d:A, 1p3d:B
47 4bs9:A 691 76 0.0397 0.0289 0.2632 1.9
48 2gup:A 289 67 0.0357 0.0623 0.2687 3.2
49 2hox:B 427 84 0.0397 0.0468 0.2381 5.4 2hor:A, 2hox:C, 2hox:A, 2hox:D, 1lk9:B, 1lk9:A
50 2z77:D 130 31 0.0218 0.0846 0.3548 6.1
51 4pv6:G 154 143 0.0615 0.2013 0.2168 7.4 4pv6:C, 4pv6:I, 4pv6:F, 4pv6:A, 4pv6:H, 4pv6:J, 4pv6:E
52 4v1t:B 753 76 0.0377 0.0252 0.2500 8.9 4v1t:A, 4v1u:A, 4v1u:B, 4v1v:A, 4v1v:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218