Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QPIIQFDAESWEAEFTQEIQDKAIEGLESGSVLFFPKLNFPLLTEELKFLDPTWVSGAKNISYDPRSATLKGVEGKSEDL
RLLSGLLKRYAEKTAAFLHLLFPFYGSSLKIARTSFRPVEISGRATSARKDDTRLHVDAFPSSPTGGERILRVFSNINPQ
GKPRSWRIGEPFQNYLNHLLPQLSPPAPGKRFLLYLFGITKGYRSLYDHYMLELHDKGKLDLEYQKNSPQVAFDFPAGST
WIVFTDQVLHAVDKGQFLLEQTFHLKVNALKHPEKSPLKLLETALNKKLVSSESFKLA

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5y9x:A 298 298 1.0000 1.0000 1.0000 0.0 5y9i:A, 5y9y:A, 5yka:A, 5yvz:A, 5yw0:A
2 1i3k:A 347 49 0.0705 0.0605 0.4286 0.10 1ek5:A, 1ek6:A, 1ek6:B, 1hzj:A, 1hzj:B, 1i3k:B, 1i3l:A, 1i3l:B, 1i3m:A, 1i3m:B, 1i3n:A, 1i3n:B
3 1a9y:A 338 94 0.0973 0.0858 0.3085 0.22 1a9z:A, 5gy7:A, 5gy7:B, 1kvq:A, 1kvr:A, 1kvs:A, 1kvt:A, 1kvu:A, 1lrj:A, 1lrk:A, 1lrl:A, 1nah:A, 1nai:A, 1uda:A, 1udb:A, 1udc:A, 2udp:A, 2udp:B, 1xel:A
4 1z45:A 674 48 0.0705 0.0312 0.4375 0.91
5 4lis:A 364 101 0.1107 0.0907 0.3267 1.2 4lis:B, 4lis:C
6 8fac:A 1377 60 0.0705 0.0153 0.3500 1.6 8e04:A
7 2cw6:A 296 27 0.0369 0.0372 0.4074 2.7 2cw6:B, 2cw6:C, 2cw6:D, 2cw6:E, 2cw6:F, 3mp3:A, 3mp3:B, 3mp3:C, 3mp3:D, 3mp3:E, 3mp3:F, 3mp5:B, 3mp5:C
8 6ig2:D 278 67 0.0705 0.0755 0.3134 4.2 6ig4:A, 6ig4:B
9 3dbx:A 279 46 0.0470 0.0502 0.3043 4.4
10 1gd9:A 388 148 0.1376 0.1057 0.2770 4.5 1dju:A, 1dju:B, 1gd9:B, 1gde:A, 1gde:B
11 6ui4:A 692 56 0.0604 0.0260 0.3214 4.7
12 3q13:A 236 76 0.0638 0.0805 0.2500 5.1
13 8bn5:B 267 30 0.0436 0.0487 0.4333 6.4 8blj:A, 8blj:B, 8blj:C, 8blj:D, 8blj:E, 8blj:F, 8bn2:A, 8bn2:B, 8bn5:A
14 8wov:B 341 71 0.0805 0.0704 0.3380 7.6 8wop:A, 8wop:B, 8wov:A, 8wow:A, 8wow:B
15 2v6i:A 421 40 0.0470 0.0333 0.3500 7.7
16 6jp4:A 770 125 0.1174 0.0455 0.2800 8.4 6jp4:B, 6jp4:C, 6jph:A, 6jpn:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218