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BioLiP
>protein
QNYLLRYLSLGPVLLFAWLSFTAVLLIVFNYLYPDLL

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qco:q 37 37 1.0000 1.0000 1.0000 2.43e-19 7qco:j
2 4fe1:J 41 36 0.5135 0.4634 0.5278 1.21e-06 7fix:J1, 7fix:J2, 7fix:J3, 1jb0:J, 6k33:aJ, 6k33:bJ, 6k33:cJ, 7m75:J, 7m76:J, 7m78:J, 3pcq:J, 6pfy:J, 6pfy:S, 6pfy:f, 6pgk:J, 6pgk:S, 6pgk:f, 6tra:J, 6trc:J, 6trc:j, 6trc:8, 6trd:J, 6trd:j, 6trd:8, 5zf0:J1, 5zf0:J2, 5zf0:J3, 5zf0:J4, 5zf0:J6, 5zf0:J5
3 6k61:J 45 37 0.4595 0.3778 0.4595 1.38e-06 6jeo:aJ, 6jeo:bJ, 6jeo:cJ, 6jeo:dJ, 6k61:j, 6tcl:J1, 6tcl:J2, 6tcl:J, 6tcl:JJ, 7y3f:J
4 8wm6:J 42 33 0.4865 0.4286 0.5455 1.79e-06 8wmj:J, 8wmv:J, 8wmw:J, 7y7b:J, 7y8a:J
5 6l4u:J 41 32 0.4324 0.3902 0.5000 6.94e-06
6 6vpv:J 39 34 0.5676 0.5385 0.6176 7.80e-06 6vpv:j, 6vpv:8
7 6kif:J 41 36 0.4865 0.4390 0.5000 8.84e-06 6kif:T, 6kif:l, 6kig:J, 6kig:T, 6kig:l
8 4l6v:F 125 34 0.5135 0.1520 0.5588 6.37e-05 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
9 8cmo:J 40 31 0.4324 0.4000 0.5161 1.10e-04
10 7d0j:J 41 31 0.4324 0.3902 0.5161 8.33e-04 7bgi:J, 7blx:J, 7dz7:J, 7dz8:J, 8h2u:J, 6ijj:J, 6ijo:J, 6jo5:J, 6jo6:J, 7r3k:J, 7wyi:J, 7wzn:J, 7zq9:J, 7zqc:J, 7zqd:J, 7zqd:J2
11 6igz:J 41 29 0.3784 0.3415 0.4828 0.002
12 7y5e:JN 38 36 0.4595 0.4474 0.4722 0.003 7y5e:J2, 7y7a:J7, 7y7a:Jo
13 6qph:J 41 31 0.4054 0.3659 0.4839 0.004 6rhz:J, 6sl5:J, 6yxr:J
14 7blz:J 38 34 0.4324 0.4211 0.4706 0.005 6fos:J, 8wey:J, 5zgb:J, 5zgh:J
15 8htu:J 41 31 0.4324 0.3902 0.5161 0.005 7ksq:J, 7kux:J, 6l35:J, 7xqp:J
16 8bcv:J 43 31 0.4324 0.3721 0.5161 0.016 7ew6:J, 7ewk:J, 7f9o:J, 7f9o:m, 8j6z:J, 8j7a:J, 8j7b:J, 3lw5:J, 2o01:J, 7wfd:AJ, 7wfe:BJ, 7wg5:AJ, 7wg5:BJ, 8wgh:J, 2wsc:J, 2wse:J, 2wsf:J, 5zji:J
17 7yca:J 41 31 0.3784 0.3415 0.4516 0.029
18 5l8r:J 42 34 0.4054 0.3571 0.4412 0.14 7dkz:J, 6ly5:j, 4rku:J, 4xk8:J, 4xk8:j, 4y28:J, 6yac:J, 6yez:J, 6zoo:J, 6zxs:J
19 7coy:aJ 35 32 0.2703 0.2857 0.3125 0.19 7coy:bJ, 7coy:cJ
20 7a4p:J 41 31 0.3784 0.3415 0.4516 0.26 6zzx:J, 6zzy:J
21 7lx0:S 43 35 0.4865 0.4186 0.5143 0.98 7lx0:j, 7lx0:J, 6pnj:J, 6pnj:S, 6pnj:j
22 7s3d:J 41 35 0.2973 0.2683 0.3143 0.99 7s3d:S, 7s3d:j
23 7dr0:J 37 32 0.4054 0.4054 0.4688 1.2 7dr1:J, 7dr2:aJ, 7dr2:bJ, 7dr2:cJ, 7dr2:dJ
24 1s59:A 153 15 0.1892 0.0458 0.4667 8.1 1s59:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218