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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QLRRIREHPCFSEKACHAFGRMHLPVAPKCNIQCKYCIRDFDCVNESRPGVTSRVLTPQEALERVDEVLSKYHYIKVVAV
AGPGEPLANEETFETLRLVGEKYPHLILCISTNGLLLPDRIEDLDRIGVTNITVTLNAVDPTIGEQIYDYVIYKGERYEG
LEAAKILLDNQLKGIEEAVRRKKIVKVNTVLIPGINDKHVFDIARKIKSMGVFIHNVMPLIPQYKFAHIKPPTPEEKRAI
QDELSKIIKQMR

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6y1x:A 252 252 1.0000 1.0000 1.0000 0.0 6y1x:B
2 7bi7:A 279 248 0.4881 0.4409 0.4960 2.42e-83 7bi7:B, 7jmb:A, 7jmb:B
3 7vob:C 327 218 0.2262 0.1743 0.2615 8.30e-07 7voc:C
4 2fb2:A 327 190 0.1984 0.1529 0.2632 5.39e-06 2fb2:B, 2fb3:A, 2fb3:B, 1tv7:A, 1tv7:B, 1tv8:A, 1tv8:B
5 5cy7:A 171 65 0.0833 0.1228 0.3231 0.004 5cp0:A, 5cpd:A, 5cvk:A, 5cvp:A, 5cvq:A, 5cwx:A, 5cwy:A, 5cx0:A, 5cxj:A, 5cy8:A, 6ikt:A, 6iky:A, 6il0:A, 6il2:A, 4nt8:A
6 4m7s:A 214 121 0.1111 0.1308 0.2314 1.0
7 4k36:A 381 101 0.1230 0.0814 0.3069 1.1 4k36:B, 4k37:A, 4k37:B, 4k38:B, 4k38:A, 4k39:B, 4k39:A
8 7ane:aj 316 42 0.0635 0.0506 0.3810 1.5
9 2i9u:A 419 60 0.0675 0.0406 0.2833 1.9 2i9u:B
10 5why:A 418 118 0.1071 0.0646 0.2288 2.1
11 4m7t:A 246 132 0.1230 0.1260 0.2348 2.1
12 7aor:aj 315 36 0.0675 0.0540 0.4722 2.5
13 5wgg:A 440 105 0.0913 0.0523 0.2190 3.2 5why:B
14 8uyh:A 375 36 0.0556 0.0373 0.3889 6.2 8uyh:B, 8uyi:A, 8uyi:B
15 8b9d:4 677 120 0.1190 0.0443 0.2500 9.3 7pfo:4, 7plo:4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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