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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QLPWKVLGKSLGLPTIEQEQYWLNTAPYFNNLLIQCGYDVHQQYQYLAFYHRHVLPVLGPFIRSSAEANYISGFSAEGYP
MELSVNYQASKATVRLGCEPVGEFAGTSQDPMNQFMTREVLGRLSRLDPTFDLRLFDYFDSQFSLTTSEANLAASKLIKQ
RRQSKVIAFDLKDGAIIPKAYFFLKGKSLASGIPVQDVAFNAIESIAPKQIESPLRVLRTFVTKLFSKPTVTSDVFILAV
DCIVPEKSRIKLYVADSQLSLATLREFWTLGGSVTDSATMKGLEIAEELWRILQYQLPLVVNYELSSGSATPKPQLYLPL
HGRNDEAMANALTKFWDYLGWKGLAAQYKKDLYANNPCRNLAETTTVQRWVAFSYTESGGAYLTVYFHAVGGMKGNL

The query sequence (length=397) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ld7:A 397 397 1.0000 1.0000 1.0000 0.0 4ld7:B, 4ld7:C, 4ld7:D, 4ld7:E, 4ld7:F, 4ld7:G, 4ld7:H, 4ld7:I, 4ld7:J, 4ld7:K, 4ld7:L, 4ld7:M, 4ld7:N, 4ld7:O, 4ld7:P
2 5kd6:A 400 398 0.4282 0.4250 0.4271 2.39e-115 5kcl:A, 5kcl:B, 5kcq:A, 5kcq:B, 5kcy:A, 5kcy:B, 5kd0:A, 5kd0:B, 5kd6:B, 5kda:A, 5kda:B
3 6vya:C 387 392 0.3224 0.3307 0.3265 4.30e-69 6vya:A, 6vya:V, 6vya:E, 6vya:G, 6vya:B, 6vya:D, 6vya:F, 6vya:H, 6vya:I, 6vya:J, 6vya:K, 6vya:L, 6vya:M, 6vya:N, 6vya:O, 6vya:P, 6vya:Q, 6vya:R, 6vya:S, 6vya:T, 6vya:U, 6vya:W, 6vya:X
4 3o2k:A 429 417 0.3174 0.2937 0.3022 2.55e-63
5 3i4z:A 438 412 0.3199 0.2900 0.3083 1.69e-60 3i4x:A, 3i4x:B, 3i4z:B
6 4e0u:A 408 406 0.3249 0.3162 0.3177 2.08e-59 4e0u:B, 7xvj:A, 7xvj:B, 7xvj:C, 7xvj:D, 7y3v:A, 7y3v:B, 7y3v:C, 7y3v:D
7 8day:A 398 399 0.2695 0.2688 0.2682 5.54e-29 8daz:A, 8daz:C, 8db0:A, 8db0:B, 8db0:C, 8db0:D, 8db1:A
8 4yzl:A 361 259 0.1537 0.1690 0.2355 0.001
9 8u0w:A 1099 71 0.0378 0.0136 0.2113 1.2
10 1r9p:A 134 85 0.0554 0.1642 0.2588 1.4
11 6ncn:A 141 32 0.0302 0.0851 0.3750 4.3 6nco:A
12 6zhe:A 3768 160 0.0932 0.0098 0.2313 6.6
13 4re6:A 577 44 0.0252 0.0173 0.2273 7.3 2hu5:A, 2hu5:B, 2hu7:A, 2hu7:B, 2hu8:A, 2hu8:B, 4re5:A, 4re5:B, 4re6:C, 1ve7:A, 1ve7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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