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BioLiP
>protein
QKVLFPTERLSLRWERVFRVGAGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHARSCHQGSFCMLCVMQNHIVQAFAN
SGNAIKPVSFIRDLKKIARHFRFGNQEDAHEFLRYTIDAMQKACLNGCAKLDRQTQATTLVHQIFGGYLRSRVKCSVCKS
VSDTYDPYLDVALEIRQAANIVRALELFVKADVLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANFSGGKIT
KDVGYPEFLNIRPYMSQNNGDPVMYGLYAVLVHSGYSCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFY
LRIP

The query sequence (length=324) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bs3:A 324 324 1.0000 1.0000 1.0000 0.0 8bs9:A, 8bs9:C
2 3mhs:A 455 316 0.3056 0.2176 0.3133 1.24e-44 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
3 2hd5:A 315 313 0.3117 0.3206 0.3227 1.44e-42
4 3nhe:A 338 332 0.3241 0.3107 0.3163 2.88e-42 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
5 4fjc:E 434 305 0.3056 0.2281 0.3246 1.23e-41 3m99:A, 3mhh:A
6 2y5b:E 325 327 0.3179 0.3169 0.3150 4.09e-39 3i3t:A, 3i3t:C, 3i3t:E, 3i3t:G, 3mtn:A, 3mtn:C, 2y5b:A
7 2y6e:B 339 328 0.2901 0.2773 0.2866 1.09e-37 2y6e:A, 2y6e:C, 2y6e:E, 2y6e:F
8 7r2g:B 351 332 0.2932 0.2707 0.2861 1.30e-35 6cpm:C, 6cpm:D, 6crn:A, 6crn:B, 6crn:C, 6crn:D, 6gh9:A, 6gha:A, 6ml1:A, 6ml1:B, 7r2g:A
9 4wa6:D 415 309 0.2778 0.2169 0.2913 3.61e-35 4w4u:D
10 5k16:B 328 314 0.2809 0.2774 0.2898 4.50e-35 5cvm:A, 5k16:A, 5k1c:A, 5l8h:A, 5l8w:A
11 5cvn:B 321 317 0.2840 0.2866 0.2902 4.64e-34 5cvo:B, 5cvo:E, 6jlq:A
12 5wch:A 350 296 0.2685 0.2486 0.2939 1.41e-30 5wch:B, 5wch:C, 5wch:D
13 5k1b:A 264 306 0.2685 0.3295 0.2843 3.01e-30
14 9fcj:D 312 323 0.2531 0.2628 0.2539 9.65e-29 7ay0:B, 9fci:D
15 7ay1:D 341 341 0.2623 0.2493 0.2493 2.20e-28 8a9j:D, 7ay2:B, 7zh3:D
16 8a9k:D 285 312 0.2469 0.2807 0.2564 8.68e-28 7ay0:D, 7zh4:D
17 3n3k:A 355 338 0.2809 0.2563 0.2692 2.03e-25 2gfo:A, 8xpn:A, 8xpn:B
18 7w3u:A 343 293 0.2284 0.2157 0.2526 2.53e-25 7w3r:A, 7w3u:B, 7w3u:C
19 8itn:A 350 340 0.2685 0.2486 0.2559 1.73e-24 8itn:C, 8itp:D, 8itp:B
20 5txk:A 317 320 0.2901 0.2965 0.2938 1.18e-22
21 5n9t:A 357 324 0.2593 0.2353 0.2593 3.56e-21 8d4z:A, 8d4z:B, 6f5h:A, 6f5h:B, 6m1k:A, 6m1k:B, 5n9r:A, 5n9r:B, 5n9t:B, 5nge:A, 5ngf:A, 5ngf:B, 5uqv:A, 5uqv:B, 5uqx:A, 5uqx:B, 6vn2:A, 6vn2:B, 6vn3:A, 6vn3:B, 6vn4:A, 6vn4:B, 6vn5:A, 6vn5:B, 6vn6:A, 6vn6:B, 5vs6:A, 5vs6:B, 5vsb:A, 5vsb:B, 5vsk:A, 5whc:A, 5whc:B, 7xhh:A, 7xhh:B, 7xhk:B
22 5k1a:A 239 303 0.2438 0.3305 0.2607 9.19e-21 5k1a:C, 5k1a:E, 5k1a:G
23 8xpn:C 327 329 0.2716 0.2691 0.2675 2.08e-19
24 5ohk:A 304 314 0.2346 0.2500 0.2420 1.12e-17 5ohn:A, 5ohn:C
25 5gvi:A 326 334 0.2377 0.2362 0.2305 5.66e-16
26 6iil:A 341 355 0.2562 0.2434 0.2338 2.36e-14 6iik:A, 6iik:B, 6iil:B, 6iim:A, 6iim:B, 6iin:A, 6iin:B
27 8d1t:A 330 331 0.2284 0.2242 0.2236 9.16e-14 8d0a:A, 5ohp:A
28 8p14:A 331 330 0.2716 0.2659 0.2667 2.04e-12 8hje:A, 7tuo:A
29 5nge:B 313 320 0.2438 0.2524 0.2469 2.38e-12 5vsk:B
30 5cht:A 308 294 0.2253 0.2370 0.2483 8.85e-11 5cht:B, 5chv:A, 5chv:B
31 7ay2:E 203 170 0.1173 0.1872 0.2235 2.66e-09
32 8y6o:U 458 339 0.2346 0.1659 0.2242 2.26e-07 8h6e:4T, 8h6j:4T, 6qw6:U, 6qx9:U
33 6h4h:A 458 255 0.1975 0.1397 0.2510 1.41e-05 6h4h:B, 8p1p:A
34 6h4h:A 458 74 0.0864 0.0611 0.3784 0.018 6h4h:B, 8p1p:A
35 3ihp:B 681 144 0.1019 0.0485 0.2292 7.61e-05 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
36 3ihp:B 681 62 0.0679 0.0323 0.3548 0.002 6dxh:A, 6dxt:A, 6dxt:B, 2g43:A, 2g43:B, 2g45:A, 2g45:D, 3ihp:A, 7ms5:A, 7ms5:B, 7ms6:A, 7ms7:A, 7ms7:B, 6nft:A, 6nft:B, 6p9g:A
37 8p1q:A 439 250 0.1821 0.1344 0.2360 0.002 8p1p:B, 8p1q:B
38 8p1q:A 439 74 0.0864 0.0638 0.3784 0.019 8p1p:B, 8p1q:B
39 6k0w:B 499 144 0.1019 0.0661 0.2292 0.22
40 6k0w:A 528 144 0.1019 0.0625 0.2292 0.26
41 2ysv:A 42 25 0.0340 0.2619 0.4400 1.6
42 7w5w:J 107 68 0.0586 0.1776 0.2794 2.2 7w5x:K, 7w5y:K
43 8c61:J 330 139 0.1049 0.1030 0.2446 2.6 8c61:A, 8c61:D, 8c61:G
44 4tlx:A 415 92 0.0772 0.0602 0.2717 2.8 4tlx:B, 4tlx:C, 4tlx:D, 4tlz:A, 4tlz:B, 4tlz:C, 4tlz:D, 4tm0:A, 4tm0:B, 4tm0:C, 4tm0:D, 4tm1:A, 4tm1:B, 4tm1:C, 4tm1:D, 4tm3:A, 4tm3:B, 4tm3:C, 4tm3:D, 4tm4:A, 4tm4:B, 4tm4:C, 4tm4:D
45 3a7a:A 337 37 0.0432 0.0415 0.3784 4.1 3a7a:C, 3a7r:A, 4tvw:A, 4tvw:B, 4tvw:C, 4tvw:D, 4tvy:A, 4tvy:B, 1x2h:A, 1x2h:B
46 2yte:A 42 25 0.0309 0.2381 0.4000 4.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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