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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QKKMKYLENLVGKTPMLELIFDYKGEERRIFVKNESYNLTGSIKDRMAFYTLKKAYEKNEIKKGAPIVEATSGNTGIAFS
AMGAILGHPVIIYMPDWMSEERKSLIRSFGAKIILVSRKEGGFLGSIEKTKEFAKNNPDTYLPSQFSNLYNSEAHYYGIG
LEIVNEMKSLNLNIDGFVAGVGTGGTVMGIGKRIKENFSNAKICPLEPLNSPTLSTGYKVAKHRIEGISNEFIPDLVKLD
KLDNVVSVDDGDAIVMAQKLAKCGLGVGISSGANFIGALMLQNKLGKDSVIVTVFPDDNKKYLSTDLMREEKVKEDFLSK
DITLKEIKNVLRVI

The query sequence (length=334) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5z5c:B 336 333 0.9940 0.9881 0.9970 0.0 5b53:A, 5b55:A, 5b55:B, 5z5c:A, 5z5c:C, 5z5c:D
2 8b9w:A 329 313 0.3892 0.3951 0.4153 5.49e-56 8b9w:B
3 6kr5:B 336 318 0.3533 0.3512 0.3711 5.69e-53 6kr5:A
4 6ahi:B 306 302 0.3353 0.3660 0.3709 8.52e-53
5 3vbe:C 329 309 0.3683 0.3739 0.3981 6.00e-52 3vbe:A, 3vbe:B, 3vbe:D, 3vc3:A, 3vc3:B, 3vc3:C, 3vc3:D, 3vc3:E, 3vc3:F
6 3t4p:A 319 308 0.3563 0.3730 0.3864 1.10e-50 3tbh:A
7 8b9y:C 330 306 0.3713 0.3758 0.4052 3.30e-50 8b9y:A, 8b9y:B, 8b9y:D
8 2q3d:A 306 305 0.3473 0.3791 0.3803 7.09e-50 2q3c:A, 3zei:A
9 2eco:A 302 304 0.3503 0.3874 0.3849 8.69e-50 2ecq:A, 2efy:A, 2efy:B, 1ve1:A
10 3bm5:A 338 307 0.3383 0.3343 0.3681 2.51e-47 3bm5:B, 4il5:A, 4jbl:B, 4jbn:A, 2pqm:A, 2pqm:B
11 6c2h:A 345 331 0.3383 0.3275 0.3414 1.41e-46 6c2q:A, 6c2z:A, 6c4p:A
12 5xoq:A 310 302 0.3383 0.3645 0.3742 7.29e-46 5xoq:B
13 2isq:A 320 313 0.3653 0.3812 0.3898 8.68e-46 1z7w:A, 1z7y:A
14 4aec:A 323 313 0.3683 0.3808 0.3930 1.90e-45 4aec:B
15 5b1i:A 303 302 0.2964 0.3267 0.3278 7.55e-45 5b1i:B, 5b1i:C, 5b1i:D, 5b1i:E, 5b1i:F, 5b1i:G, 5b1i:H
16 5xem:A 302 301 0.3413 0.3775 0.3787 2.08e-44 5xem:B, 5xen:A, 5xen:B, 5xeo:A, 5xeo:B
17 4lma:A 318 301 0.3263 0.3428 0.3621 7.67e-44 4lma:B
18 4lmb:A 310 309 0.3323 0.3581 0.3592 1.53e-43
19 2bht:A 294 308 0.3054 0.3469 0.3312 2.48e-43 2bhs:A, 2bhs:B, 2bhs:C, 2bhs:D, 2bht:B, 2bht:C, 2bht:D, 2jc3:A, 2jc3:H, 2jc3:B, 2jc3:C, 2jc3:D, 2jc3:E, 2jc3:F, 2jc3:G, 2v03:A
20 7n2t:A 309 306 0.3473 0.3754 0.3791 5.27e-42
21 7mfj:BBB 319 306 0.2904 0.3041 0.3170 1.46e-39
22 6vju:B 317 310 0.3234 0.3407 0.3484 1.13e-37
23 5d84:A 318 314 0.2934 0.3082 0.3121 2.43e-37 5d85:A, 5d86:A, 5d87:A
24 4air:A 304 308 0.3114 0.3421 0.3377 1.17e-36 4air:B
25 3pc3:A 504 305 0.3024 0.2004 0.3311 3.02e-36 3pc2:A, 3pc4:A
26 8s5h:A 507 328 0.2994 0.1972 0.3049 4.18e-36 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
27 1d6s:A 322 319 0.3234 0.3354 0.3386 9.61e-36 1d6s:B, 1fcj:A, 1fcj:B, 1fcj:C, 1fcj:D, 1oas:A, 1oas:B, 6z4n:AAA, 6z4n:BBB
28 6xo2:A 294 304 0.2844 0.3231 0.3125 1.45e-35 7mfj:AAA, 6pmu:A, 6pmu:B
29 5dbh:X 312 310 0.3263 0.3494 0.3516 3.78e-34 6aif:A, 5dbe:X, 7djq:A, 3iqg:X, 3iqh:X, 3iqi:X, 4li3:X, 4nu8:X, 4ore:X, 1y7l:A, 7yod:A, 7yoh:A, 7yoi:A, 7yol:A, 7yom:A, 4zu1:X, 4zu6:X
30 5ohx:A 488 299 0.3054 0.2090 0.3411 9.01e-34 5ohx:B
31 3x44:A 321 304 0.2904 0.3022 0.3191 9.10e-33 3x43:A, 3x43:B, 3x43:C, 3x43:D, 3x43:E, 3x43:F, 3x43:G, 3x43:H, 3x44:B
32 6xwl:C 477 326 0.2934 0.2055 0.3006 3.15e-32 6xwl:F, 6xwl:A, 6xwl:B, 6xwl:D, 6xwl:E, 6xyl:A, 6xyl:B, 6xyl:C, 6xyl:D, 6xyl:E, 6xyl:F, 6y21:D, 6y21:A, 6y21:B, 6z3s:D, 6z3s:A, 6z3s:B, 6zs7:D, 6zs7:A, 6zs7:B, 6zs7:C, 6zs7:E, 6zs7:F
33 3dwg:A 325 285 0.2934 0.3015 0.3439 4.81e-31 3dwg:B, 3dwi:A, 3dwi:B, 5i6d:B, 5i6d:C, 5i6d:D, 5i7a:B, 5i7a:C, 5i7a:D, 5i7h:B, 5i7h:C, 5i7h:D, 5i7o:B, 5i7o:C, 5i7o:D, 5i7r:B, 5i7r:A, 5iw8:A, 5iw8:B
34 5iwc:A 297 285 0.2784 0.3131 0.3263 1.04e-25 5i6d:A, 5i7a:A, 5i7h:A, 5i7o:A, 5iwc:B
35 7xnz:B 458 306 0.2545 0.1856 0.2778 2.46e-25 7xnz:A, 7xnz:C, 7xnz:D, 7xoh:B, 7xoh:A, 7xoh:C, 7xoh:D, 7xoy:B, 7xoy:A, 7xoy:C, 7xoy:D
36 8if7:A 342 273 0.2066 0.2018 0.2527 2.81e-12
37 5b36:B 383 158 0.1437 0.1253 0.3038 7.94e-12 5b36:A, 5b3a:A, 5b3a:B, 6l0p:A, 6l0p:B, 6l0p:C, 6l0p:D, 6l0q:A, 6l0q:B, 6l0q:C, 6l0q:D, 6l0r:A, 6l0r:B, 6l0r:C, 6l0r:D, 6l0s:A, 6l0s:B, 6l0s:C, 6l0s:D, 3vsa:A, 3vsa:B, 3vsc:A, 3vsc:B, 3vsd:A, 3vsd:B, 1wkv:A, 1wkv:B
38 7nbc:AAA 323 184 0.1377 0.1424 0.2500 4.64e-08 3hmk:A, 3hmk:B, 3l6b:A, 3l6c:A, 3l6c:B, 3l6r:A, 7nbc:BBB, 7nbc:CCC, 7nbc:DDD, 7nbd:AAA, 7nbd:BBB, 7nbd:DDD, 7nbd:CCC, 7nbf:AAA, 7nbf:CCC, 7nbf:BBB, 7nbf:DDD, 7nbg:AAA, 7nbg:BBB, 7nbg:CCC, 7nbg:DDD, 7nbh:AAA, 7nbh:BBB, 7nbh:CCC, 7nbh:DDD, 6slh:AAA, 6slh:BBB, 6slh:CCC, 6slh:DDD, 5x2l:A, 5x2l:B, 6zsp:AAA, 6zsp:BBB, 6zuj:AAA, 6zuj:BBB, 6zuj:CCC, 6zuj:DDD
39 8h4q:N 488 272 0.2006 0.1373 0.2463 4.17e-07 8h4h:N, 8h4h:A, 8h4q:A
40 2zpu:A 319 112 0.0928 0.0972 0.2768 6.34e-05 1v71:A, 1wtc:A, 2zr8:A
41 5tci:H 406 174 0.1407 0.1158 0.2701 3.04e-04 6dwe:B, 6dwe:H, 6dwe:F, 6dwe:D, 6e9p:B, 6e9p:D, 6e9p:F, 6e9p:H, 5ocw:B, 5ocw:D, 5ocw:F, 5ocw:H, 5ocw:J, 5ocw:L, 5ocw:N, 5ocw:P, 5ocw:R, 5ocw:T, 5ocw:V, 5ocw:X, 5tcg:B, 5tcg:H, 5tcg:F, 5tcg:D, 5tci:B, 5tci:F, 5tci:D, 5tcj:B, 5tcj:H, 5tcj:F, 5tcj:D, 6u6c:B, 6u6c:D, 6u6c:F, 6u6c:H, 6uap:B, 6uap:D, 6uap:F, 6uap:H, 6ub9:B, 6ub9:D, 6ub9:F, 6ub9:H, 6usa:B, 6usa:D, 6usa:F, 6usa:H
42 1tdj:A 494 243 0.1886 0.1275 0.2593 0.002
43 2gn2:A 326 147 0.1257 0.1288 0.2857 0.004
44 8y1j:A 502 189 0.1257 0.0837 0.2222 0.009 8y1j:B
45 1pwh:A 327 166 0.1377 0.1407 0.2771 0.009 1pwh:B, 1pwh:C, 1pwh:D
46 5ey5:B 383 208 0.1647 0.1436 0.2644 0.009 5ey5:D
47 4d9n:A 391 65 0.0629 0.0537 0.3231 0.024 4d9m:A, 4d9m:B, 4d9n:B
48 3aex:A 351 146 0.1257 0.1197 0.2877 0.025 3aex:B, 3aey:A, 3aey:B, 1uim:A, 1uim:B, 1uin:A, 1uin:B, 1v7c:A, 1v7c:B, 1v7c:C, 1v7c:D
49 3r0x:A 438 132 0.0838 0.0639 0.2121 0.055
50 6v82:B 391 141 0.1048 0.0895 0.2482 0.098
51 4d9k:A 366 71 0.0659 0.0601 0.3099 0.15 4d9k:B, 4d9k:C
52 3ss7:X 437 137 0.0868 0.0664 0.2117 0.15 3ss9:X
53 2zsj:A 350 66 0.0659 0.0629 0.3333 0.50 2zsj:B, 2zsj:C, 2zsj:D
54 2c2g:A 448 69 0.0629 0.0469 0.3043 0.73 2c2b:A, 2c2b:B, 2c2b:C, 2c2b:D, 2c2b:E, 2c2b:F, 2c2g:B
55 6nmx:A 350 128 0.1018 0.0971 0.2656 0.87 6cgq:A, 6cgq:B, 6nmx:B, 6nmx:C, 6nmx:D
56 7oq6:A 399 109 0.0778 0.0652 0.2385 1.1 7oq6:B
57 5vf3:A 456 30 0.0389 0.0285 0.4333 1.3 5vf3:B, 5vf3:C
58 5ygr:D 388 72 0.0659 0.0567 0.3056 1.5 5ygr:A, 5ygr:C
59 5c3u:A 315 110 0.0958 0.1016 0.2909 1.6
60 2d1f:A 349 136 0.1078 0.1032 0.2647 1.8 2d1f:B
61 5ygr:B 365 54 0.0539 0.0493 0.3333 3.7
62 8vhh:A 389 119 0.0898 0.0771 0.2521 4.5 8egy:A, 8egy:B, 8egz:A, 8egz:B, 8eh0:A, 8eh0:B, 8eh1:A, 8eh1:B, 8vhh:B
63 5ux1:C 202 34 0.0359 0.0594 0.3529 4.6 5ux1:A, 5ux1:B, 5ux1:D
64 7vrg:A 540 32 0.0329 0.0204 0.3438 6.8 5gqb:A, 6jmn:A, 7vrg:B
65 5fj9:A 1412 218 0.1587 0.0375 0.2431 7.4 6f40:A, 6f41:A, 6f42:A, 6f44:A, 5fja:A, 6tut:A
66 7r0h:A 654 127 0.1108 0.0566 0.2913 8.1 3a1c:A, 3a1c:B, 3a1d:A, 3a1d:B, 3a1e:A, 3a1e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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