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BioLiP
>protein
QKKKLKSFTNKYVVLDSLEGLRSLPDNSVQCVVTSPPYNKMNEDDYQKWQLQILNEINRILKPGGSAFYNHKPPEKFLSD
SDLELYQTIIWDRGSTVNQNARYFRPYVEKIFWFTKSISGESTTPKFHRDRLPEYFKGVIWRIPPDKRNKHPAPFPAILA
EICILTTTEEGDLVLDPFAGSGTTLVAAASLKRSYLGFDISSKYQKMFHQRLATSKSKVHLWL

The query sequence (length=223) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8s9o:A 230 224 0.9910 0.9609 0.9866 6.85e-166 8s9n:A, 8s9o:B
2 8s9m:A 241 246 0.9462 0.8755 0.8577 2.94e-149
3 1nw8:A 272 244 0.3094 0.2537 0.2828 1.04e-16 1eg2:A, 1nw5:A, 1nw6:A, 1nw7:A
4 2zif:B 243 234 0.3094 0.2840 0.2949 1.06e-16 2zif:A
5 6pbd:B 331 219 0.2780 0.1873 0.2831 1.08e-16
6 9c3s:A 250 238 0.3004 0.2680 0.2815 2.62e-16 9c3s:B, 9c3s:C, 9c3s:D, 9c3t:A, 9c3t:B, 9c3t:C, 9c3t:D, 9c3u:A, 9c3u:B, 9c3u:C, 9c3u:D, 8urk:A, 8urk:B, 8urk:C, 8urk:D
7 1boo:A 282 240 0.2870 0.2270 0.2667 8.92e-15
8 6pbd:A 350 242 0.2870 0.1829 0.2645 1.04e-13
9 1g60:A 238 228 0.2691 0.2521 0.2632 6.33e-12 1g60:B
10 5hfj:C 204 87 0.1300 0.1422 0.3333 1.49e-08 5hfj:A, 5hfj:B, 5hfj:D, 5hfj:E, 5hfj:F, 5hfj:G, 5hfj:H
11 7wzg:B 243 85 0.1211 0.1111 0.3176 0.011 7wzg:A, 7wzg:C, 7wzg:D, 7wzg:E, 7wzg:F
12 6k0w:A 528 26 0.0717 0.0303 0.6154 0.022
13 3tm5:A 368 67 0.1166 0.0707 0.3881 0.023 3tlj:A, 3tlj:B, 3tm4:A, 3tm4:B, 3tm5:B
14 3v97:B 641 129 0.1704 0.0593 0.2946 0.023 3v8v:B
15 6k0w:D 435 26 0.0717 0.0368 0.6154 0.024 6k0w:C
16 6k0w:B 499 26 0.0717 0.0321 0.6154 0.026
17 6k0w:B 499 53 0.0717 0.0321 0.3019 5.2
18 6zxv:A 325 120 0.1300 0.0892 0.2417 0.062 6zxv:B, 6zxw:G
19 2ou2:A 246 137 0.1570 0.1423 0.2555 0.18
20 8psn:A 417 76 0.0987 0.0528 0.2895 0.26 8pso:A, 8psq:A, 8pss:A, 8psu:A, 8psx:A, 8psz:A, 8pt2:A, 8pt6:A, 8pt7:A, 8pth:A, 8ptj:A, 8qz8:A
21 3ldu:A 377 40 0.0762 0.0451 0.4250 0.57
22 3i9f:B 169 61 0.0852 0.1124 0.3115 0.65 3i9f:A
23 5e72:A 323 63 0.0987 0.0681 0.3492 0.84
24 5e72:A 323 42 0.0717 0.0495 0.3810 8.0
25 6cx6:B 333 59 0.0673 0.0450 0.2542 1.3 6cx6:A, 5eg5:A, 4fr0:A, 4fsd:A, 4kw7:A, 4rsr:A
26 3v97:A 667 40 0.0717 0.0240 0.4000 1.8 3v8v:A
27 5d79:A 498 76 0.1031 0.0462 0.3026 3.0 5d79:B
28 7uhy:A 771 42 0.0628 0.0182 0.3333 3.1 7uhy:B
29 8hwh:A 353 132 0.1390 0.0878 0.2348 3.3 8xj8:D
30 2yqz:A 261 65 0.0852 0.0728 0.2923 3.4 2yqz:B
31 8wh6:E 751 132 0.1390 0.0413 0.2348 3.7 8apm:A, 8apm:F, 8apm:E, 8hwa:A, 8hwa:C, 8hwa:D, 8hwa:E, 8hwa:F, 8hwa:B, 8hwb:A, 8hwb:C, 8hwb:D, 8hwb:E, 8hwb:B, 8hwd:B, 8hwe:D, 8hwe:E, 8hwe:C, 8hwe:B, 8hwf:C, 8hwf:B, 8hwf:E, 8hwf:D, 8hwf:A, 8hwf:F, 8hwg:C, 8hwg:B, 8hwg:D, 8hwg:A, 8hwg:E, 8hwg:F, 8hwh:C, 8wh4:B, 8wh4:C, 8wh4:F, 8wh6:C, 8wh6:A, 8wh6:B, 8wh6:D, 8xj6:B, 8xj6:C, 8xj6:E, 8xj6:F, 8xj7:B, 8xj7:C, 8xj7:D, 8xj7:A, 8xj8:A, 8xj8:B, 8xj8:C
32 5wci:A 284 115 0.1435 0.1127 0.2783 5.1 6ba2:A, 6ba4:A, 7cmr:A, 6ct2:A, 4dnc:A, 4dnc:B, 2giv:A, 5j8c:A, 5j8f:A, 6oin:A, 6oio:A, 6oip:A, 6oiq:A, 6oir:A, 6owh:A, 6owi:A, 6pd8:A, 6pd9:A, 6pda:A, 6pdb:A, 6pdc:A, 6pdd:A, 6pde:A, 6pdf:A, 6pdg:A, 2pq8:A, 3qah:A, 3toa:A, 3tob:A, 8w13:A, 2y0m:A
33 6ahd:1 1048 76 0.0762 0.0162 0.2237 6.7 7abg:u, 7abh:u, 7abi:u, 6ah0:1, 7b0i:C, 7b91:C, 7b9c:C, 8ch6:C, 7dvq:1, 6en4:C, 7evo:1, 6ff4:u, 6ff7:u, 8h6e:2G, 8h6j:2G, 8h6k:2G, 8h6l:2G, 8hk1:1, 8i0p:1, 8i0r:1, 8i0s:1, 8i0t:1, 8i0u:1, 7omf:C, 7onb:C, 7opi:C, 7q3l:A, 7q4o:A, 7q4p:A, 8qo9:B1, 7qtt:C, 6qx9:B1, 8qxd:B1, 8qzs:B1, 8r08:B1, 8r09:B1, 8r0a:B1, 8r0b:B1, 8rm5:B1, 7vpx:1, 6y50:u, 6y5q:u, 8y7e:1, 5z56:1, 5z57:1, 5z58:1, 5zya:C
34 3cjt:A 254 30 0.0673 0.0591 0.5000 7.4 3cjq:A, 3cjq:D, 3cjq:G, 3cjr:A, 3cjt:C, 3cjt:E, 3cjt:G, 3cjt:I, 3cjt:K, 3cjt:M, 3cjt:O, 3egv:A, 2nxe:A, 2nxe:B, 2zbp:A, 2zbq:A, 2zbr:A
35 4l0o:H 373 71 0.0717 0.0429 0.2254 7.6 4l0o:A, 4l0o:C, 4l0o:E, 4l0o:G, 4l0o:M, 4l0o:O
36 3dh0:B 190 50 0.0717 0.0842 0.3200 7.6 3dh0:A
37 8p1x:AAA 492 38 0.0493 0.0224 0.2895 7.7 8p20:AAA, 8p20:BBB, 8p20:CCC, 8p20:DDD, 7qd7:AAA, 7qh9:AAA, 7qh9:BBB, 7qh9:CCC, 7qh9:DDD
38 5lr8:A 844 39 0.0583 0.0154 0.3333 8.9 5lr8:B, 5lra:A, 5lra:B, 5lrb:B, 5lrb:A
39 3afl:A 766 26 0.0583 0.0170 0.5000 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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