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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDL
DVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVK
VNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRH
KDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQ
TVANRQ

The query sequence (length=326) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2fb2:A 327 326 0.9908 0.9878 0.9908 0.0 2fb2:B, 2fb3:A, 2fb3:B, 1tv7:A, 1tv7:B, 1tv8:A, 1tv8:B
2 7vob:C 327 172 0.1564 0.1560 0.2965 1.75e-10 7voc:C
3 7tom:A 498 281 0.2147 0.1406 0.2491 7.06e-09 7tol:A
4 7bi7:A 279 193 0.1380 0.1613 0.2332 3.45e-07 7bi7:B, 7jmb:A, 7jmb:B
5 6q2p:B 293 226 0.1503 0.1672 0.2168 3.45e-06 6q2p:A, 6q2q:A, 6q2q:B, 5vsl:A, 5vsl:B, 5vsm:A, 5vsm:B
6 6y1x:A 252 190 0.1534 0.1984 0.2632 4.05e-06 6y1x:B
7 6c8v:A 312 239 0.1718 0.1795 0.2343 8.75e-04
8 5wgg:A 440 125 0.1074 0.0795 0.2800 0.005 5why:B
9 7n7i:A 279 149 0.1074 0.1254 0.2349 0.006 7n7i:B, 7n7i:C
10 5why:A 418 125 0.1074 0.0837 0.2800 0.007
11 7n7h:A 289 287 0.1656 0.1869 0.1882 0.007
12 6efn:A 383 117 0.0859 0.0731 0.2393 0.012
13 3neh:A 309 136 0.1135 0.1197 0.2721 0.088 3neh:B
14 7x0b:B 301 97 0.0859 0.0930 0.2887 0.093 7wzv:A, 7wzv:B, 7wzx:A, 7x0b:A
15 4wcx:A 454 112 0.0767 0.0551 0.2232 1.0 4wcx:C
16 5v1q:B 440 176 0.1288 0.0955 0.2386 1.1 5v1q:A, 5v1s:A, 5v1s:B, 5v1t:A
17 3v97:B 641 87 0.0706 0.0359 0.2644 3.3 3v8v:B
18 4k36:A 381 315 0.1748 0.1496 0.1810 6.3 4k36:B, 4k37:A, 4k37:B, 4k38:B, 4k38:A, 4k39:B, 4k39:A
19 2oof:A 403 73 0.0552 0.0447 0.2466 8.3 2q09:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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