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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QIEIEWVQPGITVTADLSWERNPELAELLWTGLLPYNSLQNHALVSGNHLYHLIADPRLVYTEARYKEDRTKSPDGTVFL
SQLQHLAVKYGPLTEYLPAAPVGSVVPEDIDALREAGRACWKAAWETKQPIEVRVRRKGEAVTDFALPRTPPVDHPGVQK
LVEEIQDETERVWITPPAEIVDMHQGRIASRAGSYDQYFSTLVFLNGEVRPLGYCALNGLLKICRTTDLTLNDLKRITPT
FIKTPAEFLGYTGLDTLWRFTQQVLTLLPDVETREQYFALVNALALYANMLNTWNLHFFPWQHGTDYRY

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3x27:D 314 309 1.0000 0.9841 1.0000 0.0 3x27:A, 3x27:B, 3x27:C
2 6hiv:CH 273 72 0.0680 0.0769 0.2917 0.13 6hiw:CH, 6hiy:CH, 7pub:CH
3 5zq6:A 828 83 0.0874 0.0326 0.3253 2.5 5zq4:B, 5zq4:A, 5zq6:C, 5zq7:A, 5zq7:C
4 7ttj:A 643 68 0.0712 0.0342 0.3235 2.7 7ttl:B, 3v99:A
5 3v99:B 639 68 0.0712 0.0344 0.3235 2.8
6 6ncf:B 676 68 0.0712 0.0325 0.3235 2.8 6ncf:A, 6ncf:C, 6ncf:D, 3o8y:A, 3o8y:B, 7ttk:A, 7ttk:B, 7ttl:A, 7ttl:D, 3v92:B, 3v92:A, 3v98:A, 3v98:B
7 7ttl:C 617 68 0.0712 0.0357 0.3235 3.1 6n2w:A, 6n2w:B
8 4d1j:D 540 60 0.0615 0.0352 0.3167 6.6 4d1j:A, 4d1j:B, 4d1j:C, 4d1j:E, 4d1j:F, 4d1j:G, 4d1j:H, 5jaw:A, 5jaw:D, 5jaw:B, 5jaw:C, 5jaw:E, 5jaw:F, 5jaw:G, 5jaw:H, 8pej:A, 8pej:B, 8pej:C, 8pej:D, 8pej:E, 8pej:F, 8pej:G, 8pej:H, 6tbf:A, 6tbf:B, 6tbf:C, 6tbf:D, 6tbf:E, 6tbf:F, 6tbf:G, 6tbf:H, 6tbg:A, 6tbg:B, 6tbg:C, 6tbg:D, 6tbg:E, 6tbg:F, 6tbg:G, 6tbg:H, 6tbh:A, 6tbh:C, 6tbh:B, 6tbh:D, 6tbh:E, 6tbh:G, 6tbh:F, 6tbh:H, 6tbi:A, 6tbi:B, 6tbi:C, 6tbi:D, 6tbi:E, 6tbi:F, 6tbi:G, 6tbi:H, 6tbj:A, 6tbj:B, 6tbj:C, 6tbj:D, 6tbj:E, 6tbj:F, 6tbj:G, 6tbj:H, 6tbk:A, 6tbk:B, 6tbk:C, 6tbk:D, 6tbk:E, 6tbk:F, 6tbk:G, 6tbk:H
9 8wp1:A 304 67 0.0680 0.0691 0.3134 6.6 8jpn:R
10 5wid:A 144 54 0.0485 0.1042 0.2778 7.7 5wid:B, 5wid:C
11 5xyf:A 192 18 0.0227 0.0365 0.3889 7.9
12 3din:A 816 45 0.0356 0.0135 0.2444 8.6 3din:B, 3jux:A, 4ys0:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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