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BioLiP
>protein
QHKKIKGYRDLSQEEIDMMNRVKELGSQFEKLIQDVSDHLRGQYNASLHNRDEITRIANAEPGRWLAIGKTDIQTGMMAI
IRAIAQPDSF

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8h2j:A 92 90 1.0000 0.9783 1.0000 4.94e-64 8h2j:B, 8h2j:C, 8h2j:D, 8h2j:E, 8h2j:F, 8h39:A, 8h39:B, 8h39:C, 8h39:D, 8h39:E, 8h39:F, 8ixz:A, 8ixz:B, 8ixz:C, 8ixz:D, 8ixz:E, 8ixz:F, 8iy0:A, 8iy0:B, 8iy0:C, 8iy0:D, 8iy0:E, 8iy0:F, 8iy1:A, 8iy1:B, 8iy1:C, 8iy1:D, 8iy1:E, 8iy1:F, 8iy2:A, 8iy2:B, 8iy2:C, 8iy2:D, 8iy2:E, 8iy2:F, 8j8o:A, 8j8o:B, 8j8o:C, 8j8o:D, 8j8o:E, 8j8o:F
2 7uq2:A 89 85 0.2778 0.2809 0.2941 0.002 7uq2:E, 7uq2:B, 7uq2:D, 7uq2:C, 7uq2:F
3 2w8q:A 485 33 0.1444 0.0268 0.3939 0.27 2w8r:A
4 5nj5:A 480 50 0.1556 0.0292 0.2800 0.44 5nj5:C, 5nj9:A, 5nj9:C, 5nja:A, 5nja:C, 5njb:A, 5njb:C, 5njc:A, 5njc:C, 5njf:A, 5njf:C
5 7dut:A 220 59 0.2000 0.0818 0.3051 0.73 7dv3:A, 7dv3:B, 7dwr:A, 7dwr:D, 7dwr:B, 7dwr:C
6 7vml:A 4044 72 0.1889 0.0042 0.2361 0.79 7aih:UA, 7am2:UA, 7ane:UA, 5dat:l1, 5gak:r, 6hd7:r, 6j3z:19, 6j40:19, 6j40:39, 5mc6:AZ, 6n8k:s, 6n8l:s, 6n8m:S, 6n8n:S, 6n8o:S, 7nrc:Lt, 6o1o:F, 6o1o:G, 6o1o:H, 6qik:p, 6qtz:p, 6ri5:p, 7rr5:L1, 6rzz:p, 6s05:p, 5t62:S, 5t6r:S, 6tnu:BT, 7vml:B, 7vml:C, 7vml:D, 7vmm:A, 7vmm:B, 7vmm:C, 7vmm:D, 7vmn:A, 7vmn:B, 7vmn:C, 7vmn:D, 7vmo:A, 7vmo:B, 7vmo:C, 7vmo:D, 7vmp:A, 7vmp:B, 7vmp:C, 7vmp:D, 7vmq:A, 7vmq:B, 7vmq:C, 7vmq:D, 7vmr:A, 7vmr:B, 7vmr:C, 7vmr:D, 7vms:A, 7vms:B, 7vms:C, 7vms:D
7 7wnn:B 290 63 0.2333 0.0724 0.3333 0.82 7wnn:A, 7wnw:B, 7wnw:A
8 5gju:A 199 61 0.1889 0.0854 0.2787 0.94
9 4um9:D 455 32 0.1333 0.0264 0.3750 1.6 5ffg:B, 5ffo:B, 5ffo:F, 5neu:B, 8tcg:B, 4um8:B, 4um8:D, 4um9:B
10 8dtz:A 4061 64 0.1889 0.0042 0.2656 2.1 8dtz:B, 8dtz:C, 8dtz:D
11 3b1f:A 286 20 0.1111 0.0350 0.5000 2.7
12 9exy:B 135 34 0.1333 0.0889 0.3529 3.3 6ue6:C, 6ue6:F
13 4mxp:A 310 30 0.1222 0.0355 0.3667 3.8
14 6g8g:A 195 56 0.1778 0.0821 0.2857 4.0 6g8g:B, 6g8g:C, 6g8g:D, 6g8h:CCC, 6g8h:BBB
15 7ui9:q 515 86 0.2000 0.0350 0.2093 5.0 4h62:Q, 7uif:q, 7uig:q, 7uio:Aq, 7uio:Bq
16 5wti:Z 982 33 0.1444 0.0132 0.3939 5.4
17 4fzy:A 167 52 0.1556 0.0838 0.2692 5.5 4fzx:C, 4fzx:D, 4fzy:B, 4fzz:A, 4fzz:B
18 5dd0:H 221 50 0.1667 0.0679 0.3000 7.2
19 4cvq:A 404 40 0.1444 0.0322 0.3250 7.2 4cvq:B
20 5tiz:A 253 23 0.1000 0.0356 0.3913 7.3
21 8a8w:D 577 40 0.1333 0.0208 0.3000 9.1 8a8u:B, 8a8u:C, 8a8u:D, 8a8u:E, 8a8u:A, 8a8v:B, 8a8v:C, 8a8v:D, 8a8v:E, 8a8v:A, 8a8w:A, 8a8w:B, 8a8w:C, 8a8w:E
22 8bie:A 318 42 0.1333 0.0377 0.2857 9.2 8bie:B, 8bij:A, 8bij:B
23 4r6l:A 473 29 0.1444 0.0275 0.4483 9.8 4e04:A, 4e04:B, 4r6l:B, 4s21:A, 4s21:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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