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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNV
LTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLP
YQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLN
EAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSV
RVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEID
MDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR

The query sequence (length=443) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ec9:D 444 443 1.0000 0.9977 1.0000 0.0 1ec7:A, 1ec7:B, 1ec7:C, 1ec7:D, 1ec8:A, 1ec8:B, 1ec8:C, 1ec8:D, 1ec9:A, 1ec9:B, 1ec9:C, 1ecq:A, 1ecq:B, 1ecq:C, 1ecq:D, 4gyp:A, 4gyp:B, 1jct:A, 1jct:B, 1jdf:A, 1jdf:B, 1jdf:C, 1jdf:D, 3pwg:A, 3pwg:B, 3pwg:C, 3pwg:D, 3pwi:A, 3pwi:B
2 3p0w:B 428 438 0.6795 0.7033 0.6872 0.0 3p0w:A, 3p0w:C, 3p0w:D
3 3nxl:C 425 436 0.6411 0.6682 0.6514 0.0 3nxl:A, 3nxl:B, 3nxl:D
4 3nfu:A 441 439 0.5892 0.5918 0.5945 0.0 3nfu:B
5 3n6h:B 432 441 0.6005 0.6157 0.6032 0.0 3n6h:A, 3n6h:C, 3n6h:D, 3pfr:A, 3pfr:B, 3pfr:C, 3pfr:D
6 4it1:D 427 438 0.3499 0.3630 0.3539 4.77e-70 4it1:A
7 3vc6:A 420 438 0.3386 0.3571 0.3425 3.01e-68
8 3va8:A 427 441 0.3409 0.3536 0.3424 3.29e-68
9 4hpn:A 378 386 0.2167 0.2540 0.2487 1.23e-11 4ggb:A
10 3u4f:A 371 312 0.1941 0.2318 0.2756 3.04e-10 3u4f:B, 3u4f:C, 3u4f:D
11 3dg6:A 366 302 0.1738 0.2104 0.2550 5.54e-09 3dg3:A, 3dg7:A, 3dg7:B, 3dg7:C, 3dg7:D
12 3t8q:B 369 239 0.1422 0.1707 0.2636 6.01e-09 3t8q:A
13 2ps2:A 361 309 0.1603 0.1967 0.2298 9.37e-09 2ps2:B, 2ps2:C, 2ps2:D
14 2ggh:C 370 335 0.1806 0.2162 0.2388 1.80e-08 2ggh:A, 2ggh:B, 2ggh:D, 1xpy:A, 1xpy:B, 1xpy:C, 1xpy:D, 1xs2:A, 1xs2:B, 1xs2:C, 1xs2:D
15 3tcs:B 367 327 0.1783 0.2153 0.2416 6.79e-08 3tcs:A
16 3rcy:F 397 386 0.1986 0.2217 0.2280 2.78e-07 3rcy:A, 3rcy:C, 3rcy:B, 3rcy:D, 3rcy:E, 3rcy:G, 3rcy:H
17 3ozm:A 386 399 0.2144 0.2461 0.2381 7.35e-07 3op2:A, 3op2:B, 3ozm:B, 3ozm:C, 3ozm:D, 3ozm:E, 3ozm:F, 3ozm:G, 3ozm:H, 3ozy:A, 3ozy:B
18 5olc:C 351 224 0.1196 0.1510 0.2366 1.76e-06 5olc:D, 5olc:F, 5olc:G, 5olc:H
19 4h1z:B 388 401 0.2144 0.2448 0.2369 1.31e-05 4h1z:A, 4h1z:C, 4h1z:D, 4h1z:E, 4h1z:F, 4h1z:G, 4h1z:H
20 3my9:A 357 294 0.1670 0.2073 0.2517 1.71e-05
21 3i6e:A 356 214 0.1151 0.1433 0.2383 1.95e-05 3i6e:B, 3i6e:C, 3i6e:D, 3i6e:E, 3i6e:F, 3i6e:G, 3i6e:H
22 3cb3:A 373 397 0.1919 0.2279 0.2141 2.93e-05 3cb3:B, 3cb3:C, 3cb3:D, 2og9:A, 2og9:B
23 3i4k:A 370 229 0.1309 0.1568 0.2533 4.10e-05 3i4k:B, 3i4k:C, 3i4k:D, 3i4k:E, 3i4k:F, 3i4k:G, 3i4k:H
24 5xd8:B 367 231 0.1129 0.1362 0.2165 5.50e-05 5xd7:A, 5xd8:A, 5xd9:A
25 3sjn:A 373 318 0.1580 0.1877 0.2201 1.25e-04 3sjn:B
26 2qvh:A 311 63 0.0451 0.0643 0.3175 0.002 2qvh:B
27 4a6g:A 368 214 0.1174 0.1413 0.2430 0.003 4a6g:B, 4a6g:C, 4a6g:D, 5fjo:A, 5fjo:B, 5fjp:A, 5fjp:B, 5fjp:C, 5fjp:D, 5fjr:A, 5fjr:B, 5fjr:C, 5fjr:D, 5fjt:A, 5fjt:B, 5fjt:C, 5fjt:D, 5fju:A, 5fju:B, 5fju:C, 5fju:D, 7s8w:A, 7s8w:B, 7s8w:C, 7s8w:D, 1sja:A, 1sja:B, 1sja:C, 1sja:D, 1sjb:A, 1sjb:B, 1sjb:C, 1sjb:D, 1sjc:A, 1sjc:B, 1sjc:C, 1sjc:D, 1sjd:A, 1sjd:B, 1sjd:C, 1sjd:D
28 3ugv:F 364 114 0.0655 0.0797 0.2544 0.004 3ugv:A, 3ugv:B, 3ugv:C, 3ugv:D, 3ugv:E, 3ugv:G, 3ugv:H
29 4mgg:A 369 392 0.1919 0.2304 0.2168 0.004 4mgg:B, 4mgg:C, 4mgg:D, 4mgg:E, 4mgg:F, 4mgg:G, 4mgg:H
30 3fvd:B 367 330 0.1716 0.2071 0.2303 0.005 3fvd:A
31 3i6t:B 364 344 0.1670 0.2033 0.2151 0.005 3i6t:A, 3i6t:C, 3i6t:D
32 2pmq:B 374 302 0.1445 0.1711 0.2119 0.006 4h2h:A, 4h2h:B, 4h2h:C, 4h2h:D, 4h2h:E, 4h2h:F, 4h2h:G, 4h2h:H, 2pmq:A
33 1wuf:A 371 225 0.1038 0.1240 0.2044 0.006 1wuf:B
34 4e6m:A 401 403 0.2032 0.2244 0.2233 0.009 4e6m:B, 4e6m:C, 4e6m:D, 4e6m:E, 4e6m:F, 4e6m:G, 4e6m:H, 2gl5:A, 2gl5:B
35 3mqt:E 378 404 0.2054 0.2407 0.2252 0.012 3mqt:A, 3mqt:D, 3mqt:F, 3mqt:G, 3mqt:H, 3mqt:K, 3mqt:L, 3mqt:U, 3mqt:V, 3mqt:W, 3mqt:X
36 1fhv:A 322 196 0.1061 0.1460 0.2398 0.020 1r6w:A
37 3h7v:A 320 117 0.0767 0.1062 0.2906 0.031
38 2chr:A 370 322 0.1625 0.1946 0.2236 0.035
39 2p88:A 369 235 0.1242 0.1491 0.2340 0.043 2p88:B, 2p88:C, 2p88:D, 2p88:E, 2p88:F, 2p88:G, 2p88:H, 2p8b:A, 2p8c:A
40 2o56:A 392 125 0.0722 0.0816 0.2560 0.048 2o56:B, 2o56:C, 2o56:D, 2o56:E, 2o56:F, 2o56:G, 2o56:H
41 4izg:A 369 296 0.1422 0.1707 0.2128 0.092 4e8g:A, 4e8g:B, 4izg:B, 4j1o:A, 4j1o:B
42 1nu5:A 369 356 0.1625 0.1951 0.2022 0.096
43 3ck5:A 357 221 0.1038 0.1289 0.2081 0.13 3ck5:B, 3ck5:C, 3ck5:D
44 7mqx:E 358 281 0.1377 0.1704 0.2171 0.21 1dtn:A, 4fp1:A, 4fp1:B, 4hnc:A, 4hnc:B, 4m6u:A, 4m6u:B, 1mdl:A, 1mdr:A, 1mns:A, 2mnr:A, 7mqx:A, 7mqx:B, 7mqx:C, 7mqx:D, 7mqx:F, 7mqx:G, 7mqx:H, 1mra:A, 3uxk:A, 3uxk:B, 3uxk:C, 3uxk:D, 3uxl:A, 3uxl:B, 3uxl:C, 3uxl:D, 6vim:A, 6vim:B, 6vim:C, 6vim:D, 6vim:E, 6vim:F, 6vim:G, 6vim:H, 4x2p:A
45 3rra:B 379 318 0.1761 0.2058 0.2453 0.28 3rra:A
46 2qq6:B 396 333 0.1761 0.1970 0.2342 0.29 2qq6:A
47 4dn1:A 389 213 0.1106 0.1260 0.2300 0.41 4dn1:B
48 5hud:D 457 63 0.0451 0.0438 0.3175 0.43 5huc:A, 5hud:A, 5hud:B, 5hud:C, 5hue:A
49 3gy1:B 388 178 0.0858 0.0979 0.2135 0.55 3gy1:A, 3s47:A, 3s47:B
50 1f9c:A 360 140 0.0813 0.1000 0.2571 0.61 1f9c:B, 1muc:A, 1muc:B, 2muc:A, 2muc:B, 3muc:A, 3muc:B
51 9bha:A 793 65 0.0451 0.0252 0.3077 0.62 5a9f:A, 5aga:A, 9bh8:A, 9bh8:B, 9bh9:A, 9bh9:B, 9bha:B, 9c5q:C, 9c5q:A
52 3nzg:D 380 123 0.0790 0.0921 0.2846 0.76 3nzg:A, 3nzg:B, 3nzg:C
53 4e4f:B 381 163 0.0880 0.1024 0.2393 0.95 4e4f:C, 4il2:A, 4il2:C, 4il2:D
54 2gge:D 376 224 0.1219 0.1436 0.2411 1.3 2gge:A, 2gge:B, 2gge:C, 2gge:E, 2gge:F, 2gge:G, 2gge:H
55 4il2:B 404 163 0.0835 0.0916 0.2270 1.3 4e4f:A, 4e4f:D
56 3fcp:A 356 26 0.0271 0.0337 0.4615 1.8 3fcp:B, 3fcp:C, 3fcp:D, 3fcp:E, 3fcp:F, 3fcp:G, 3fcp:H
57 7t02:A 1752 33 0.0271 0.0068 0.3636 4.9
58 7r78:A 1880 33 0.0271 0.0064 0.3636 4.9
59 7r76:A 1834 33 0.0271 0.0065 0.3636 5.0 7r77:A
60 3dgb:A 371 32 0.0316 0.0377 0.4375 5.2 3ct2:A, 3ct2:B, 3fj4:A, 3fj4:B
61 6p16:B 120 81 0.0497 0.1833 0.2716 5.6 6p16:A
62 6ke6:5C 535 66 0.0406 0.0336 0.2727 6.2 7ajt:UG, 7aju:UG, 7d4i:5C, 7d5s:5C, 7d5t:5C, 7d63:5C, 6lqp:5C, 6lqq:5C, 6lqr:5C, 6lqs:5C, 6lqt:5C, 6lqu:5C, 6lqv:5C, 6nd4:W, 7suk:LW, 5wlc:LW, 6zqa:UG, 6zqb:UG, 6zqc:UG, 6zqd:UG
63 6ky3:A 353 41 0.0316 0.0397 0.3415 6.5
64 2qo3:B 873 30 0.0293 0.0149 0.4333 7.3 2qo3:A
65 4m0x:A 369 55 0.0384 0.0461 0.3091 7.3 4m0x:B
66 7nhk:f 163 34 0.0339 0.0920 0.4412 7.4 6o8w:e, 6o8x:e, 6o8y:e, 6o8z:e, 6o90:e, 7p7q:f, 7p7r:f, 7p7s:f, 7p7t:f, 7p7u:f, 6w6p:e, 6wub:e
67 3p9y:A 198 48 0.0339 0.0758 0.3125 7.6 4imi:D, 4imj:D, 6npw:D, 6npw:B, 3omx:A, 3omx:B, 3omx:C, 3omx:D, 3p9y:B, 3p9y:C, 3p9y:D, 4ygx:D
68 3j9w:AE 165 34 0.0339 0.0909 0.4412 8.1 8buu:e, 8cdu:G, 8cdv:G, 8cec:G, 8ced:G, 8cee:G, 6ha1:e, 6ha8:e, 6htq:e, 5njt:E, 7o5b:E, 8qcq:e, 7qgu:j, 7qh4:i, 8qpp:E, 7qv1:e, 7qv2:e, 7qv3:e, 8r55:E
69 5u92:A 347 42 0.0271 0.0346 0.2857 9.5
70 1yey:C 435 80 0.0519 0.0529 0.2875 9.8 2hne:A, 2hne:B, 2hne:C, 2hne:D, 2hxt:A, 2hxu:A, 1yey:A, 1yey:B, 1yey:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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