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BioLiP
>protein
QFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTR

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6qx9:1K 201 57 1.0000 0.2836 1.0000 1.89e-36 7b0y:b, 4pjo:K, 4pjo:k, 4pjo:N, 4pjo:n, 8r08:1K, 7vpx:O
2 4oth:A 306 48 0.2982 0.0556 0.3542 0.61 4oti:A
3 2yg3:B 450 32 0.2105 0.0267 0.3750 1.1 2yg3:A, 2yg4:A, 2yg4:B, 2yg5:A, 2yg6:A, 2yg6:B, 2yg7:A, 2yg7:B
4 1te2:A 218 34 0.2456 0.0642 0.4118 1.8 1te2:B
5 4zad:A 511 27 0.2105 0.0235 0.4444 2.5 4zad:B
6 8e9h:D 407 17 0.1579 0.0221 0.5294 2.9 8e9g:D
7 7v4x:A 529 19 0.1228 0.0132 0.3684 5.1 6a37:A, 7v50:A, 7v51:A
8 8e72:B 598 53 0.2807 0.0268 0.3019 7.3 8dhw:A, 8dhw:B, 8e72:A
9 8rcw:A 205 33 0.1579 0.0439 0.2727 8.6 8rcw:B
10 2i2y:A 150 13 0.1579 0.0600 0.6923 8.7 9asq:H, 5bmg:A, 5bmg:B, 5bmg:H, 5bmg:D, 5bmg:E, 5bmg:F, 5bmg:G, 5bmh:A, 3v3x:C, 3v3x:D
11 7cgm:A 349 14 0.1228 0.0201 0.5000 9.6 7cgf:A, 7cgg:A, 7cgh:A, 7cgi:A, 7cgj:A, 7cgk:A, 7cgl:A, 6nod:A, 6nod:B, 6nod:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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