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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QEPLKVAFVYAGPVSDAGYTYAHDQGRLAMEKNLGAKVKSSYVENVPEGADAERVIRKLAADGNKLIFTTSFGFMNPTER
VAKAFPNVVFEHATGVKLAKNLGVYESRQYEGTYLQGVLAAKMTKTGVIGFVGSFPVPEVIRNINAYTLGAQSVNPKIKT
KVIWVSTWYDPAKERQAAETLIAQGADVLTQNTNSPATLQVAQEKGKYAFGCDADMSKFAPKAHLTASISNWGDFYTKTA
QAVMAGTWKSEEVHWGMAEGMVKMAPLNAAVPPDAAKLFEEKKAAMVSGKIKPFQGPLKDQSGAVKVAAGSDLPLASLKG
MNWYVQGVEGTI

The query sequence (length=332) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6pii:A 336 332 1.0000 0.9881 1.0000 0.0 6pi5:A, 6pi5:B, 6pi5:C, 6pi5:D, 6pi6:A, 6pi6:B, 6pi6:C, 6pi6:D, 6pii:B, 6pii:C, 6pii:D
2 3s99:A 330 329 0.5361 0.5394 0.5410 1.48e-130
3 7x0r:B 313 296 0.2319 0.2460 0.2601 4.88e-20 7x0r:A
4 6shu:A 316 239 0.1807 0.1899 0.2510 5.69e-09
5 6y9u:A 332 183 0.1717 0.1717 0.3115 1.19e-08 6y9u:B, 6y9u:C, 6y9u:D, 6ya3:C, 6ya3:A, 6ya3:B, 6ya3:D, 6ya4:C, 6ya4:A, 6ya4:B, 6ya4:D, 6yab:CCC, 6yab:AAA, 6yab:BBB, 6yab:DDD, 6yag:C, 6yag:A, 6yag:B, 6yag:D
6 4iil:A 314 261 0.1867 0.1975 0.2375 1.24e-06
7 2fqw:A 316 91 0.0843 0.0886 0.3077 0.018 2fqx:A, 2fqy:A
8 8sw0:A 864 55 0.0452 0.0174 0.2727 1.5 8sw1:A
9 4zjp:A 270 49 0.0542 0.0667 0.3673 2.8
10 8htu:2 211 47 0.0512 0.0806 0.3617 4.2 8htu:6, 7ksq:2, 7kux:2, 6l35:2, 7xqp:2, 7xqp:6
11 6pcp:A 140 46 0.0482 0.1143 0.3478 7.6 6pcp:D, 6pcp:B, 6pcp:C, 6pcp:E, 6pcp:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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