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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QAIAPEVAQSLAEFFAVLADPNRLRLLSLLARSELSVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH
HIVALYQNALDHLQESR

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1r23:A 104 96 0.9691 0.9038 0.9792 7.41e-63 1r22:A, 1r22:B, 1r23:B
2 6cdb:A 97 90 0.3505 0.3505 0.3778 6.97e-18 6cda:A, 6cdb:B, 4ggg:A, 4ggg:B, 2m30:A, 2m30:B, 1r1v:A
3 4omy:A 97 78 0.3196 0.3196 0.3974 1.65e-12 4omy:B, 4omy:C, 4omy:D, 4on0:A, 4on0:B, 4on0:C, 4on0:D
4 1u2w:B 107 87 0.3093 0.2804 0.3448 2.01e-11 1u2w:A, 1u2w:C
5 2jsc:B 97 73 0.2990 0.2990 0.3973 6.67e-09 2jsc:A
6 6o8m:A 95 86 0.2784 0.2842 0.3140 1.79e-07
7 1u2w:D 94 87 0.2680 0.2766 0.2989 2.16e-04
8 4kdp:A 151 72 0.1959 0.1258 0.2639 0.049 4ejv:A, 4ejv:B, 4ejw:A, 4ejw:B, 4kdp:B, 4kdp:C, 4kdp:D, 3kp2:A, 3kp2:B, 3kp3:B, 3kp4:A, 3kp4:B, 3kp5:A, 3kp5:B
9 8y6u:H 92 53 0.2062 0.2174 0.3774 0.34 8y6u:J
10 2pij:A 59 32 0.1340 0.2203 0.4062 1.1
11 9bh5:AK 93 41 0.1649 0.1720 0.3902 2.2 9cai:AK
12 5b6a:A 288 43 0.1753 0.0590 0.3953 3.3
13 5wci:A 284 39 0.1340 0.0458 0.3333 4.7 6ba2:A, 6ba4:A, 7cmr:A, 6ct2:A, 4dnc:A, 4dnc:B, 2giv:A, 5j8c:A, 5j8f:A, 6oin:A, 6oio:A, 6oip:A, 6oiq:A, 6oir:A, 6owh:A, 6owi:A, 6pd8:A, 6pd9:A, 6pda:A, 6pdb:A, 6pdc:A, 6pdd:A, 6pde:A, 6pdf:A, 6pdg:A, 2pq8:A, 3qah:A, 3toa:A, 3tob:A, 8w13:A, 2y0m:A
14 8c3a:w 199 47 0.1546 0.0754 0.3191 7.3 8c3a:BJ, 8cq7:w, 8cq7:BJ, 8cqw:w, 8cqw:BJ, 8cre:w, 8cre:BJ, 8oeq:w, 8oeq:BJ, 7pzy:w, 7q08:w, 7q0f:w, 7q0p:w, 7q0r:w, 8q5i:w

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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