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BioLiP
>protein
PYISAKDLKEIMYDHLPGFGTAFHQLVQVICKIGKDNNLLDTIHAEFQASLADGDSPQCALIQITKRVPIFQDVPPPIIH
IRSRGDIPRACQKSLRPAPPSPKIDRGWVCLFKMQDGKTLGLKI

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ks8:B 124 124 1.0000 1.0000 1.0000 1.83e-89 3ks8:C, 3ks8:D, 3ks8:A, 4lg2:A, 4lg2:D
2 4ibi:B 127 124 0.8790 0.8583 0.8790 1.34e-79 4ibb:A, 4ibb:B, 4ibc:A, 4ibc:B, 4ibd:A, 4ibd:B, 4ibe:A, 4ibe:B, 4ibf:A, 4ibf:B, 4ibg:A, 4ibg:B, 4ibi:A, 4ibj:A, 4ibj:B, 4ibk:A, 4ibk:B, 3l25:A, 3l25:B, 3l25:D, 3l25:E, 3l26:A, 3l26:B
3 4ghl:A 132 128 0.4435 0.4167 0.4297 1.42e-33 4gha:A, 4gha:E, 4gha:G, 4gha:C, 4ghl:D, 4ghl:B, 4ghl:C
4 4e2x:A 405 39 0.1129 0.0346 0.3590 1.5 4e2w:A, 4e2y:A, 4e2z:A, 4e30:A, 4e31:A, 4e32:A, 4e33:A, 3ndi:A, 3ndj:A
5 4quw:A 223 49 0.1210 0.0673 0.3061 3.8 6jzu:B, 6jzy:B, 6jzz:B, 4rc5:A, 4rc5:B, 4rc6:A, 4rc6:B, 4rc7:A, 4rc7:B, 4rc8:A
6 5nem:3 220 16 0.0726 0.0409 0.5625 5.5
7 5cwa:A 505 56 0.1129 0.0277 0.2500 7.5
8 6eet:A 443 25 0.0968 0.0271 0.4800 8.1 6bxz:C, 6bxz:A, 6c10:A, 5kj4:A, 5kj4:B, 5kj4:C, 5kj4:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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