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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PVTLTLYNGQHAATGIAIAKAFQDKTGIQVKIRKGGDGQLASQITEEGARSPADVLYTEESPPLIRLASAGLLAKLEPET
LALVEPEHAGGNGDWIGITARTRVLAYNPKKIDEKDLPKSLMDLSDPSWSGRFGFVPTSGAFLEQVAAVIKLKGQEEAED
WLTGLKAFGSIYTNNVTAMKAVENGEVDMALINNYYWYTLKKEKGELNSRLHYFGNQDPGALVTVSGAAVLKSSKHPREA
QQFVAFMLSEEGQKAILSQSAEYPMRKGMQADPALKPFAELDPPKLTPADLGEASEALSLERDVGL

The query sequence (length=306) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ivy:B 307 306 1.0000 0.9967 1.0000 0.0 6ivy:A, 6j2s:A, 6j2s:B
2 1d9v:A 309 307 0.4673 0.4628 0.4658 3.61e-96 3kn7:A, 3kn8:A, 1mrp:A, 1nnf:A, 2o68:A, 3od7:A, 3odb:A
3 1d9y:A 309 307 0.4575 0.4531 0.4560 9.84e-96 1o7t:A, 1o7t:B, 1o7t:C, 1o7t:D, 1o7t:E, 1o7t:F, 1o7t:G, 1o7t:H, 1o7t:I, 1r1n:A, 1r1n:B, 1r1n:C, 1r1n:D, 1r1n:E, 1r1n:F, 1r1n:G, 1r1n:H, 1r1n:I, 1xc1:A, 1xc1:B, 1xc1:C, 1xc1:D, 1xc1:E, 1xc1:F, 1xc1:G, 1xc1:H, 1xc1:I
4 1xvx:A 311 306 0.4020 0.3955 0.4020 2.05e-77
5 8k7n:A 307 306 0.3954 0.3941 0.3954 4.28e-75
6 8j4h:A 309 310 0.3889 0.3851 0.3839 2.78e-62 8j4j:A
7 4elq:A 310 311 0.3595 0.3548 0.3537 8.66e-55 4elp:A, 4elp:B, 4elp:C, 4elp:D, 4elq:B, 4elr:A, 4elr:B, 3wae:A, 3wae:B
8 7li0:A 312 266 0.2712 0.2660 0.3120 4.94e-35 7li0:B, 7li1:A, 7li1:B, 7li1:C, 7li1:D
9 6g7n:A 318 293 0.2974 0.2862 0.3106 2.69e-34 6g7n:B, 6g7p:B, 6g7p:A
10 3f11:A 316 301 0.3007 0.2911 0.3056 4.82e-34 2pt2:A
11 2vp1:A 313 303 0.3072 0.3003 0.3102 2.36e-33 2vp1:B
12 3e13:X 317 319 0.3105 0.2997 0.2978 2.90e-33 1y4t:A, 1y4t:D
13 2owt:A 315 291 0.2908 0.2825 0.3058 9.04e-24 2ows:A
14 8c4y:AAA 312 311 0.2484 0.2436 0.2444 1.35e-22 8oei:A, 8oem:A, 8oen:A, 8ogg:A, 8rk1:A
15 1si0:A 316 285 0.2288 0.2215 0.2456 2.51e-20 1si1:A
16 8x1a:B 319 299 0.2516 0.2414 0.2575 2.45e-09
17 4r73:A 321 250 0.2124 0.2025 0.2600 4.09e-09 4r73:B, 4r74:A, 4r74:B, 4r74:C, 4r74:D, 4r75:A
18 2qry:C 318 273 0.2320 0.2233 0.2601 1.01e-06 2qry:A, 2qry:B, 2qry:D
19 6wce:A 314 301 0.2288 0.2229 0.2326 9.45e-06
20 5t1p:D 328 181 0.1536 0.1433 0.2597 0.002 5t1p:A, 5t1p:B, 5t1p:C
21 2zyo:A 385 128 0.0948 0.0753 0.2266 0.031 2zyk:A, 2zyk:B, 2zyk:C, 2zyk:D, 2zym:A, 2zyn:A
22 6rjy:A 415 64 0.0654 0.0482 0.3125 0.042 6rkh:A, 6rkj:A, 6rkl:A, 6rkx:A, 6rl1:A, 6rl2:A
23 6hhb:A 345 263 0.1765 0.1565 0.2053 0.099 6hhb:B, 6hhb:C, 6hhb:D
24 7vfq:C 397 38 0.0523 0.0403 0.4211 0.38 7vfq:A, 7vfq:B, 7vfq:D, 7vfr:A
25 2z8d:A 401 38 0.0490 0.0374 0.3947 0.55 2z8d:B, 2z8e:A, 2z8e:B, 2z8f:A, 2z8f:B
26 7cvx:B 220 59 0.0654 0.0909 0.3390 0.70 7cvv:A, 7cvv:B, 7cvv:C, 7cvw:A, 7cvw:B, 7cvx:A
27 4kd5:C 229 27 0.0425 0.0568 0.4815 1.8
28 8dty:A 4004 48 0.0588 0.0045 0.3750 2.4 8dty:B, 8dty:C, 8dty:D
29 6wou:A 3921 48 0.0588 0.0046 0.3750 2.4 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
30 8dtz:A 4061 48 0.0588 0.0044 0.3750 2.5 8dtz:B, 8dtz:C, 8dtz:D
31 7ua3:A 4443 48 0.0588 0.0041 0.3750 2.5 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
32 8dvv:A 3886 48 0.0588 0.0046 0.3750 2.5 8dvv:B, 8dvv:C, 8dvv:D
33 6jrs:A 3488 48 0.0588 0.0052 0.3750 2.6 6jrs:D, 6jrs:G, 6jrs:J
34 8uxl:A 4232 48 0.0588 0.0043 0.3750 2.6 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
35 6jgz:B 3485 48 0.0588 0.0052 0.3750 2.6 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
36 6jiy:A 3521 48 0.0588 0.0051 0.3750 2.6 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
37 5go9:A 3423 48 0.0588 0.0053 0.3750 2.6 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
38 8uxh:A 4004 48 0.0588 0.0045 0.3750 2.7 8uxh:B, 8uxh:C, 8uxh:D, 8uxi:A, 8uxi:B, 8uxi:C, 8uxi:D
39 7vml:A 4044 48 0.0588 0.0045 0.3750 2.7 7aih:UA, 7am2:UA, 7ane:UA, 5dat:l1, 5gak:r, 6hd7:r, 6j3z:19, 6j40:19, 6j40:39, 5mc6:AZ, 6n8k:s, 6n8l:s, 6n8m:S, 6n8n:S, 6n8o:S, 7nrc:Lt, 6o1o:F, 6o1o:G, 6o1o:H, 6qik:p, 6qtz:p, 6ri5:p, 7rr5:L1, 6rzz:p, 6s05:p, 5t62:S, 5t6r:S, 6tnu:BT, 7vml:B, 7vml:C, 7vml:D, 7vmm:A, 7vmm:B, 7vmm:C, 7vmm:D, 7vmn:A, 7vmn:B, 7vmn:C, 7vmn:D, 7vmo:A, 7vmo:B, 7vmo:C, 7vmo:D, 7vmp:A, 7vmp:B, 7vmp:C, 7vmp:D, 7vmq:A, 7vmq:B, 7vmq:C, 7vmq:D, 7vmr:A, 7vmr:B, 7vmr:C, 7vmr:D, 7vms:A, 7vms:B, 7vms:C, 7vms:D
40 6k31:A 1109 106 0.0948 0.0261 0.2736 4.6 6k31:B
41 8id1:A 780 49 0.0621 0.0244 0.3878 4.6
42 7f6e:B 341 237 0.1797 0.1613 0.2321 8.1 7f6e:A, 7f6e:C, 7f6f:A, 7f6f:B, 7f6n:A, 7f6n:B, 7f6n:C, 7f6o:A, 7f6o:B, 7f6q:A, 7f6r:A, 7f6s:A, 7f6u:A
43 5a3k:A 335 56 0.0490 0.0448 0.2679 8.8 5a3k:B, 5a3k:C, 5ag3:A, 5ag3:B
44 3i09:A 375 34 0.0392 0.0320 0.3529 9.6 3i09:B
45 8i7j:M 122 38 0.0523 0.1311 0.4211 9.9 6fyx:M, 6fyy:M, 6gsm:M, 6gsn:M, 5it7:M, 5it9:M, 3j80:M, 3j81:M, 3jam:M, 3jap:M, 8rw1:M, 8s8d:M, 8s8e:M, 8s8f:M, 8s8g:M, 8s8h:M, 8s8i:M, 8s8j:M, 6uz7:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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