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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PTSSSSLDITSNCIIETPLQPSDFLPKSANLFPKFPERISVDSWELWEFDTFDTNGSVAFGCSLYRDARGVEQGGFHAEV
NALWPDGTHWGETLYFAVSEVVENSDGTTGGKWLSKDGGSITFHIASDYTAAALDFNVPGKVSGTMELRNHANVSPTSNL
PASDAEAQLCPGVYYTFPMGPVATSVTATFSSVGANGESRELFISSGYGGMVRGWSARPWPTFMNDAYYVVAQVGPYMLQ
ILRTLGSVFVQHKPFAVARLYLDGSLVSAANTVVGGDAVRLTKVQPDEKSQGLSGKFRDGNVGYVLEFAKKDSEHGWTFQ
ISHKRAVWSEPTSAPGPDGTGKSGWIEAISGGAKGENYEGHGFGGQLQIPVP

The query sequence (length=372) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7e5v:A 372 372 1.0000 1.0000 1.0000 0.0 7e5v:B, 7e5v:C
2 7e22:A 366 362 0.3656 0.3716 0.3757 2.17e-78
3 6kbc:A 378 374 0.3468 0.3413 0.3449 8.46e-61
4 4f43:A 320 45 0.0457 0.0531 0.3778 0.38 4dwp:A, 4e0g:A, 4e0j:A, 4e0p:A, 4e0y:A, 4e0z:A, 4e10:A, 4f41:A
5 1f1u:A 322 32 0.0349 0.0404 0.4062 3.7 1f1r:A, 1f1r:B, 1f1u:B, 1f1v:A, 1f1v:B
6 4ghc:C 361 34 0.0323 0.0332 0.3529 3.8 5bwg:A, 5bwg:B, 5bwg:C, 5bwg:D, 5bwh:A, 5bwh:B, 5bwh:C, 5bwh:D, 3bza:A, 3bza:B, 3bza:C, 3bza:D, 3ecj:A, 3ecj:B, 3ecj:C, 3ecj:D, 3eck:A, 3eck:B, 3eck:C, 3eck:D, 1f1x:A, 1f1x:B, 1f1x:C, 1f1x:D, 4ghc:A, 4ghc:B, 4ghc:D, 4ghd:A, 4ghd:B, 4ghd:C, 4ghd:D, 4ghe:A, 4ghe:B, 4ghe:C, 4ghe:D, 4ghf:A, 4ghf:B, 4ghf:C, 4ghf:D, 4ghg:A, 4ghg:B, 4ghg:C, 4ghg:D, 4ghh:A, 4ghh:B, 4ghh:C, 4ghh:D, 2ig9:A, 2ig9:B, 2ig9:C, 2ig9:D, 2iga:A, 2iga:B, 2iga:C, 2iga:D, 3ojj:A, 3ojj:B, 3ojj:C, 3ojj:D, 3ojk:A, 3ojk:B, 3ojk:C, 3ojk:D, 3ojn:A, 3ojn:B, 3ojn:C, 3ojn:D, 3ojt:A, 3ojt:B, 3ojt:C, 3ojt:D, 1q0c:A, 1q0c:B, 1q0c:C, 1q0c:D, 1q0o:A, 1q0o:B, 5trx:A, 5trx:B, 5trx:C, 5trx:D, 4z6l:A, 4z6l:B, 4z6l:C, 4z6l:D, 4z6m:A, 4z6m:B, 4z6m:C, 4z6m:D, 4z6n:A, 4z6n:B, 4z6n:C, 4z6n:D, 4z6o:A, 4z6o:B, 4z6o:C, 4z6o:D, 4z6p:A, 4z6p:B, 4z6p:C, 4z6p:D, 4z6q:A, 4z6q:B, 4z6q:C, 4z6q:D, 4z6r:A, 4z6r:B, 4z6r:C, 4z6r:D, 4z6s:A, 4z6s:B, 4z6s:C, 4z6s:D, 4z6t:A, 4z6t:B, 4z6t:C, 4z6t:D, 4z6u:A, 4z6u:B, 4z6u:C, 4z6u:D, 4z6v:A, 4z6v:B, 4z6v:C, 4z6v:D, 4z6w:A, 4z6w:B, 4z6w:C, 4z6w:D, 4z6z:A, 4z6z:B, 4z6z:C, 4z6z:D
7 6pbc:A 1070 62 0.0430 0.0150 0.2581 4.8
8 7ysu:C 211 78 0.0672 0.1185 0.3205 7.9 7ysu:E
9 8i3a:A 562 31 0.0323 0.0214 0.3871 8.0 8i39:A, 8i39:B, 8i3a:B, 8i3b:A, 8i3b:B, 8i3c:A, 8i3c:B, 8iwn:A, 8iwn:C, 8wam:A, 8wam:B, 8wba:A, 8wba:B
10 2a5l:B 175 44 0.0538 0.1143 0.4545 8.6 2a5l:A, 1zwl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218