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BioLiP
>protein
PTPVPLPNSEQFYLENDRGEPYLIQVSWPLHWEDKQTGRGPLPIIYIVDGNALFLTATEAAWRRAAASHFAGGGIIVAIG
YPLKGKLYDARRRSFDLTPPTACAPVGYGGADVFLDFIENSVRPAVQARFPQVSLAREALYGHSYGGLLALHALFTRPQS
FDCYIASSPSIWWNSLCILHEAKAFVETKQSPSLMVSWGSWEQHPPRWADELLDHYEARKRTAAELRMADNALDLCAMLH
GCSRLHALIKTEYEGEDHTSVMSCSVSRGLTMFFEDWPFHQS

The query sequence (length=282) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gud:A 282 282 1.0000 1.0000 1.0000 0.0 6gur:A, 6gur:B
2 6gi5:B 271 180 0.2660 0.2768 0.4167 1.04e-28 6gi1:A, 6gi1:B, 6gi2:A, 6gi2:B, 6gi5:A
3 2gzs:A 249 115 0.1170 0.1325 0.2870 2.37e-07
4 7jn7:A 846 48 0.0674 0.0225 0.3958 6.40e-04 6eor:A, 6eor:C, 6eor:D, 7jn7:D, 6qzv:A, 6qzv:C, 6qzv:D, 7svl:A, 7svl:B, 7svl:C, 7svl:D, 7svn:A, 7svn:B, 7svn:C, 7svn:D, 6x6c:A, 6x6c:D, 7zxs:A, 7zxs:B, 7zxs:C, 7zxs:D
5 6eor:B 805 48 0.0674 0.0236 0.3958 7.11e-04 6qzv:B
6 3mga:B 395 80 0.0887 0.0633 0.3125 0.001
7 2dcm:A 662 60 0.0567 0.0242 0.2667 0.037 2eep:A, 2z3z:A
8 4q1v:A 707 120 0.0993 0.0396 0.2333 0.15 4q1v:B
9 6qe2:A 257 58 0.0674 0.0739 0.3276 0.15 6qe2:B
10 4re6:A 577 62 0.0709 0.0347 0.3226 0.27 2hu5:A, 2hu5:B, 2hu7:A, 2hu7:B, 2hu8:A, 2hu8:B, 4re5:A, 4re5:B, 4re6:C, 1ve7:A, 1ve7:B
11 8wt1:C 651 54 0.0603 0.0261 0.3148 0.82 8wt1:A, 8wt1:B, 8wt1:D, 8wt1:E, 8wt1:F, 8wt1:G, 8wt1:H
12 2bkl:B 677 58 0.0709 0.0295 0.3448 1.2 2bkl:A
13 3e4d:A 278 48 0.0461 0.0468 0.2708 1.6 3e4d:B, 3e4d:C, 3e4d:E, 3e4d:D, 3e4d:F
14 4lho:A 131 41 0.0426 0.0916 0.2927 3.8 4lho:B, 4lho:C, 4lho:D, 4lho:E, 3mlc:A, 3mlc:B, 3mlc:C, 3mlc:D, 3mlc:E
15 7p0y:A 278 41 0.0390 0.0396 0.2683 3.9 7p0y:B
16 5yp2:A 724 41 0.0496 0.0193 0.3415 4.4 5yp2:B, 5yp3:A, 5yp3:B, 5yp3:C, 5yp3:D, 5yp4:A, 5yp4:B, 5yp4:C, 5yp4:D
17 3i6y:A 278 54 0.0674 0.0683 0.3519 4.5 3i6y:B, 3s8y:A
18 1dbp:A 271 28 0.0390 0.0406 0.3929 5.3 1drj:A, 1drk:A, 2dri:A, 2gx6:A
19 4bp9:A 710 138 0.1170 0.0465 0.2391 5.3 4bp9:B, 4bp9:C, 4bp9:D, 4bp9:E, 4bp9:F
20 5jyd:B 292 53 0.0745 0.0719 0.3962 6.1 5jyd:A, 5jyd:C, 5jyd:D, 5jyd:E, 5jyd:F, 5jyd:G, 5jyd:H, 5u8p:A, 5u8p:B
21 4n8e:B 734 57 0.0638 0.0245 0.3158 6.4 4a5s:A, 4a5s:B, 2ajl:I, 2ajl:J, 6b1e:A, 6b1e:B, 6b1o:A, 6b1o:B, 2bgn:A, 2bgn:B, 2bgn:C, 2bgn:D, 2bgr:A, 2bgr:B, 3bjm:A, 3bjm:B, 2bub:A, 2bub:B, 3c43:A, 3c43:B, 3c45:A, 3c45:B, 3ccb:A, 3ccb:B, 3ccb:C, 3ccb:D, 3ccc:A, 3ccc:B, 3ccc:C, 3ccc:D, 3d4l:A, 3d4l:B, 4dsa:A, 4dsz:A, 4dsz:B, 4dtc:A, 4dtc:B, 3eio:A, 3eio:B, 3f8s:A, 3f8s:B, 2fjp:A, 2fjp:B, 3g0b:A, 3g0b:B, 3g0b:C, 3g0b:D, 3g0c:A, 3g0c:B, 3g0c:C, 3g0c:D, 3g0d:A, 3g0d:B, 3g0d:C, 3g0d:D, 3g0g:A, 3g0g:B, 3g0g:C, 3g0g:D, 4g1f:A, 4g1f:B, 4g1f:C, 4g1f:D, 2g5p:A, 2g5t:A, 2g63:B, 3h0c:A, 3h0c:B, 3hab:A, 3hab:B, 3hac:A, 3hac:B, 2hha:A, 2hha:B, 2i03:B, 2i78:B, 5i7u:A, 5i7u:B, 2iit:A, 2iit:B, 2iiv:A, 2iiv:B, 5ism:A, 5ism:B, 4j3j:A, 4j3j:B, 5j3j:A, 5j3j:B, 4jh0:A, 4jh0:B, 2jid:A, 2jid:B, 5kby:A, 5kby:B, 5kby:C, 5kby:D, 3kwf:A, 3kwf:B, 3kwj:A, 3kwj:B, 4lko:A, 4lko:B, 1n1m:A, 1n1m:B, 4n8d:A, 4n8d:B, 4n8e:A, 3nox:A, 3nox:B, 1nu8:B, 3o95:A, 3o95:B, 3o95:C, 3o95:D, 3o9v:A, 3o9v:B, 3o9v:C, 3o9v:D, 2oag:B, 3oc0:A, 3oc0:B, 2ogz:A, 2ogz:B, 2ole:A, 2ole:B, 2onc:A, 2onc:B, 2onc:C, 2onc:D, 2oph:A, 2oph:B, 3opm:A, 3opm:B, 3opm:C, 3opm:D, 2oqi:B, 2oqv:A, 2p8s:A, 2p8s:B, 4pnz:A, 4pnz:B, 4pv7:A, 4pv7:B, 3q0t:A, 3q0t:B, 3q8w:A, 3q8w:B, 3qbj:A, 3qbj:B, 2qjr:A, 2qjr:B, 2qky:A, 2qky:B, 2qky:C, 2qky:D, 2qoe:A, 2qoe:B, 2qt9:A, 2qt9:B, 2qtb:A, 2qtb:B, 1r9n:A, 1r9n:B, 1r9n:C, 1r9n:D, 2rgu:A, 2rgu:B, 2rip:A, 1rwq:A, 1rwq:B, 3sww:A, 3sww:B, 3sx4:A, 3sx4:B, 5t4b:A, 5t4b:B, 5t4e:A, 5t4e:B, 5t4f:A, 5t4f:B, 5t4h:A, 5t4h:B, 1tkr:A, 1tkr:B, 3vjk:A, 3vjk:B, 3vjl:A, 3vjl:B, 3vjm:A, 3vjm:B, 3w2t:A, 3w2t:B, 1wcy:A, 1wcy:B, 3wqh:A, 3wqh:B, 1x70:A, 1x70:B, 5y7h:A, 5y7h:B, 5y7j:A, 5y7j:B, 5y7j:C, 5y7j:D, 5y7k:A, 5y7k:B, 5y7k:C, 5y7k:D, 5zid:A, 5zid:B
22 6y0f:C 722 53 0.0638 0.0249 0.3396 6.4 6y0f:A, 6y0f:B, 6y0f:D
23 7e2s:A 233 40 0.0496 0.0601 0.3500 7.0 7e2t:A, 7e2u:A, 4xkb:A, 4xkc:A
24 2gbf:A 730 57 0.0638 0.0247 0.3158 9.5 4ffw:A, 4ffw:B, 2gbg:A, 2gbi:A, 2i3z:A, 2oae:A, 5vta:A, 5vta:B, 5vta:C, 5vta:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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