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BioLiP
>protein
PTLWSRVTKFGSGWGFWVSPTVFITTTHVIPTSAKEFFGEPLTSIAIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTV
CSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATK
SGNTVVCAVQA

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2iph:A 180 171 1.0000 0.9500 1.0000 1.63e-126 6bib:A, 6bib:B, 6bic:A, 6bic:B, 6bid:A, 5dg6:A, 5dgj:A, 5e0g:A, 5e0h:A, 5e0j:A, 4imq:A, 4imz:A, 4inh:B, 4inh:A, 4inh:C, 4inh:D, 4inh:E, 4inh:F, 4inh:G, 4inh:H, 2iph:B, 6t2i:A, 6t3g:A, 6t49:A, 6t4e:A, 6t4e:B, 6t5d:B, 6t5r:B, 5t6d:A, 5t6d:B, 5t6f:A, 5t6f:B, 5t6g:A, 5t6g:B, 6t6w:A, 6t71:B, 6t82:B, 6t8r:A, 6t8r:B, 6t8t:B, 6tal:B, 6taw:A, 6taw:B, 6tbo:A, 6tbo:B, 6tbp:A, 6tcf:B, 5tg1:A, 5tg2:A, 6tgl:B, 3ur9:A, 3ur9:B, 6w5h:A, 6w5h:B, 6w5h:C, 6w5h:D, 6w5j:A, 6w5j:B, 6w5k:A, 6w5k:B, 6w5k:C, 6w5k:D, 6w5l:A, 6w5l:B, 6w5l:C, 6w5l:D, 5wej:A, 5wej:B, 4xbb:A, 4xbc:A, 4xbd:A, 4xbd:B
2 6nir:B 170 170 0.6725 0.6765 0.6765 2.00e-87 8u1w:A
3 4x2v:A 174 169 0.5673 0.5575 0.5740 1.11e-70 4x2v:D
4 3i0o:A 329 49 0.1053 0.0547 0.3673 1.5 3i0q:A, 3q2m:A
5 7bam:A 1904 71 0.1345 0.0121 0.3239 2.4 7bam:B, 7ban:A, 7ban:B, 7bao:A, 7plp:A, 7plp:B
6 6vft:C 420 76 0.1287 0.0524 0.2895 3.7 6vft:A, 6vft:B, 6vft:D
7 4caz:A 489 44 0.0936 0.0327 0.3636 3.8 4caz:B, 2wme:A, 2wme:B, 2wme:C, 2wme:D, 2wme:E, 2wme:F, 2wme:G, 2wme:H, 2wox:A, 2wox:B, 2wox:C, 2wox:D, 2xdr:A, 2xdr:B, 2xdr:C, 2xdr:D, 3zqa:A, 3zqa:B, 3zqa:C, 3zqa:D
8 1ekb:B 235 86 0.1228 0.0894 0.2442 6.5
9 8skf:A 497 31 0.0819 0.0282 0.4516 7.6 8skf:B, 8uzk:A, 8uzk:B, 8uzk:C, 8uzk:D, 8uzm:A, 8uzm:B, 8uzm:C, 8uzm:D, 8uzn:A, 8uzn:B, 8uzn:C, 8uzn:D, 8uzo:A, 8uzo:B, 8uzo:C, 8uzo:D, 8vj3:A, 8vj3:B, 8vj3:C, 8vj3:D, 8vqw:C, 8vqw:D, 8vqz:A, 8vqz:B, 8vqz:C, 8vqz:D, 8vr0:A, 8vr0:B, 8vr0:C, 8vr1:A, 8vr1:B, 8vr1:C, 8vr1:D
10 3u4j:A 505 44 0.0760 0.0257 0.2955 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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