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BioLiP
>protein
PSFPHNAIEPCVICQTRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6sqr:A 69 64 0.9844 0.9130 0.9844 2.01e-42 7ai0:AAA, 7ai0:DDD, 7ai1:AAA, 7ai1:DDD, 2hdp:A, 2hdp:B, 5mnj:C, 5mnj:G, 6sqo:A, 6sqo:D, 6sqp:A, 6sqp:B, 6sqp:C, 6sqp:D, 6sqr:D, 6sqr:G, 6sqr:J, 6sqs:A, 6sqs:D, 2vje:A, 2vje:C, 2vjf:A, 2vjf:C
2 7ahz:GGG 60 58 0.8125 0.8667 0.8966 1.43e-35 7ahy:AAA, 7ahy:BBB, 7ahz:AAA, 7ahz:DDD, 7ahz:JJJ
3 7ah2:AAA 58 56 0.7188 0.7931 0.8214 7.39e-31 7ah2:BBB
4 7mla:A 67 60 0.4062 0.3881 0.4333 1.28e-18 5mnj:D, 5mnj:H, 2vje:B, 2vje:D, 2vjf:B, 2vjf:D
5 3t6p:A 330 52 0.2969 0.0576 0.3654 0.005 3d9t:A, 3d9t:B, 3d9u:A, 8dsf:A, 8dsf:B, 8dsf:C, 8dsf:D, 8dso:D, 4eb9:A, 4eb9:B, 4eb9:C, 4eb9:D, 6exw:A, 6exw:C, 6hpr:A, 4hy4:A, 4hy4:B, 4hy5:A, 4hy5:B, 4lge:A, 4lge:B, 4lgu:A, 4lgu:B, 5m6n:A, 5m6n:B, 4mti:A, 4mti:B, 3mup:A, 3mup:B, 3mup:C, 3mup:D, 4mu7:A, 4mu7:B, 3oz1:A, 3oz1:B, 3oz1:C, 3oz1:D, 1qbh:A, 7trm:A, 3uw4:A, 6w74:A, 6w7o:C, 6w7o:D, 6w8i:F, 6w8i:D, 6w8i:E
6 3eb5:A 65 45 0.2812 0.2769 0.4000 0.019 3eb6:A
7 6k2k:A 57 54 0.2812 0.3158 0.3333 0.034 6m2c:E, 6m2c:F, 6m2c:G, 6m2c:H, 6m2d:A, 6m2d:B, 6m2d:C, 6m2d:D, 6m2d:E, 6m2d:F
8 2yho:E 70 36 0.2031 0.1857 0.3611 0.087 2yhn:A, 2yhn:B, 2yho:A, 2yho:C, 2yho:G
9 1chc:A 68 28 0.1406 0.1324 0.3214 0.23
10 2jrp:A 81 43 0.2656 0.2099 0.3953 0.24
11 5zi6:A 55 32 0.1875 0.2182 0.3750 0.56 5zi6:B, 5zi6:C, 5zi6:D, 5zi6:E, 5zi6:F, 5zi6:G, 5zi6:H
12 6f98:A 78 27 0.1562 0.1282 0.3704 0.59
13 4iqy:A 221 40 0.2344 0.0679 0.3750 1.1 4iqy:B
14 6skz:A 2638 27 0.1875 0.0045 0.4444 1.9 6sl0:A, 6sl0:B
15 4auq:B 57 53 0.2969 0.3333 0.3585 2.3 4auq:E
16 4df9:C 405 28 0.1562 0.0247 0.3571 2.6 4df9:A, 4df9:B, 4df9:D, 4df9:E, 4df9:F
17 6akd:A 488 22 0.1562 0.0205 0.4545 2.7
18 5d0m:C 60 55 0.2500 0.2667 0.2909 3.0 5ulh:C, 5ulk:C
19 3p1v:A 406 30 0.1406 0.0222 0.3000 3.2 3p1v:B
20 3lrq:D 84 27 0.1562 0.1190 0.3704 3.2 3lrq:A, 3lrq:B, 3lrq:C
21 4axd:A 433 9 0.0938 0.0139 0.6667 3.6 4aqk:A, 4axe:A, 6fjk:A, 6fl3:A, 6fl8:A, 2xal:A, 2xal:B, 2xam:A, 2xam:B, 2xan:B, 2xao:B, 2xar:A, 2xar:B
22 5g1n:E 307 34 0.1719 0.0358 0.3235 4.7 5g1n:A, 5g1n:B, 5g1n:C, 5g1n:D, 5g1n:F, 5g1p:A, 5g1p:B, 5g1p:C, 5g1p:D, 5g1p:E, 5g1p:F
23 2ecg:A 75 45 0.2812 0.2400 0.4000 4.9 4ic2:A, 4ic2:B, 4ic3:A, 4ic3:B, 5o6t:A, 5o6t:B, 8w59:A, 8w59:B, 8w5a:A, 8w5a:B
24 6o7i:A 741 47 0.1875 0.0162 0.2553 5.0
25 6muu:A 780 47 0.1875 0.0154 0.2553 5.1 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A
26 1jhd:A 396 25 0.1719 0.0278 0.4400 5.4
27 7t92:C 317 43 0.1719 0.0347 0.2558 6.7
28 1r5t:A 141 19 0.1562 0.0709 0.5263 8.9 1r5t:B, 1r5t:C, 1r5t:D
29 3e5z:A 290 21 0.1250 0.0276 0.3810 8.9 3e5z:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417