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BioLiP
>protein
PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEE
LVLLVLGQQPV

The query sequence (length=91) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1y02:A 91 91 1.0000 1.0000 1.0000 1.07e-63
2 1joc:A 123 35 0.1429 0.1057 0.3714 0.10 1hyi:A, 1hyj:A, 1joc:B
3 2yqm:A 89 31 0.1429 0.1461 0.4194 0.42 2yw8:A
4 3t7l:A 74 50 0.1648 0.2027 0.3000 0.43
5 1qd1:B 325 25 0.1429 0.0400 0.5200 0.46 1qd1:A
6 6w9n:A 78 30 0.1319 0.1538 0.4000 0.53
7 7yca:L 158 15 0.0989 0.0570 0.6000 2.7
8 4avx:A 218 31 0.1319 0.0550 0.3871 3.8 3zyq:A
9 7vex:A 412 28 0.1099 0.0243 0.3571 4.1 8h4m:A
10 1dvp:A 217 31 0.1209 0.0507 0.3548 4.5
11 6klb:A 1118 35 0.1319 0.0107 0.3429 8.9 6klb:D
12 6kl9:A 1180 35 0.1319 0.0102 0.3429 9.0
13 5xut:A 1217 35 0.1319 0.0099 0.3429 9.0 5id6:A, 6nm9:B, 6nm9:D, 6nma:B, 6nmc:A, 6nmd:A, 6nme:A, 6omv:B, 5xus:A, 5xuu:A, 5xuz:A, 5xuz:E
14 6kdy:D 342 25 0.0879 0.0234 0.3200 9.7 8grd:B, 8gru:B, 8gru:D, 6kdy:B, 6kdy:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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