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BioLiP
>protein
PRRPRCPGDDASIEDLHEYWARLWNYLYRVA

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5wpl:I 32 31 0.9677 0.9375 0.9677 3.24e-17 5wha:F, 5wha:I, 5wha:L, 5whb:I, 5whb:L, 5whb:C, 5whb:F, 5whe:F, 5wpl:C, 5wpl:F, 5wpl:L
2 2na5:A 34 29 0.4516 0.4118 0.4828 7.91e-04
3 5k61:A 431 37 0.4516 0.0325 0.3784 1.9 5b62:A, 5k60:A, 5k62:A, 5k63:A, 5k66:A
4 4txe:A 288 15 0.2903 0.0312 0.6000 2.4 2uy3:A, 2uy4:A, 2uy5:A
5 7wtb:B 1147 15 0.2903 0.0078 0.6000 4.2 3bg3:A, 3bg3:B, 3bg3:C, 3bg3:D, 3bg9:A, 3bg9:B, 3bg9:C, 3bg9:D, 8j7o:A, 8j7o:B, 8j7o:C, 8j7o:E, 7wta:C, 7wta:B, 7wta:D, 7wta:A, 7wtb:C, 7wtb:A, 7wtb:D, 7wtc:C, 7wtc:A, 7wtc:B, 7wtc:D, 7wtd:C, 7wtd:D, 7wte:C, 7wte:D
6 8hwl:A 941 15 0.2903 0.0096 0.6000 4.3 8hwl:B, 8hwl:C, 8hwl:E
7 5btr:A 370 10 0.2258 0.0189 0.7000 5.3 5btr:B, 4i5i:A, 4i5i:B, 4if6:A, 4ig9:A, 4ig9:E, 4ig9:C, 4ig9:G, 4kxq:A, 4zzh:A, 4zzi:A, 4zzj:A
8 2r7d:A 461 25 0.3226 0.0217 0.4000 6.6 2r7d:B, 2r7d:C
9 8d3x:A 989 21 0.2258 0.0071 0.3333 6.8 8d3u:A, 8d3w:A
10 4ywt:A 411 16 0.2581 0.0195 0.5000 7.7 4bwe:A, 4bwe:C, 4ywt:C
11 5ikb:A 249 12 0.1613 0.0201 0.4167 8.0
12 4ywt:B 431 16 0.2581 0.0186 0.5000 8.3 4bwe:B, 4bwe:D, 4ywt:D
13 1exw:A 279 13 0.2258 0.0251 0.5385 9.0
14 3d9k:B 141 8 0.2258 0.0496 0.8750 9.2 3d9k:A, 3d9l:A, 3d9l:B, 3d9m:A, 3d9m:B, 3d9n:A, 3d9n:B, 3d9o:B, 3d9p:A, 3d9p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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