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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PRPRYREERTLVRKLLPRPGQSKQEFRENVKKLRKAFLQFNADVSGVCQWAIQFRPRYGKPAEPTETFWKFFLEPETSLP
PNDSRSPEFRRLQAFEAAAGINGAAALDDPAFTNELRDSILAVASRPKTKEAQRLFSRLKDYQPAHRMILAKVAAEWIES
RYRRAHQNWERNYEEWKKEKQEWEQNHPELTPEIREAFNQIPAARLLQNKDNCQYAGKNKHSHTALCKQYQQQLSHDELY
RKWRREYWREPRKPVFRYPSVKRHSIAKIFGENYFQADFKNSVVGLRLDSMPAGQYLEFAFAPWPRNYRPQPGETEISSV
HLHFVGTRPRIGFRFRVPHKRSRFDCTQEELDELRSRTFPRKAQDQKFLEAARKRLLETFPGNAEQELRLLAVDLGTDSA
RAAFFIGKTFQQAFPLKIVKIEKLYEQWPNQKQAGDRRDASSKQPRPGLSRDHVGRHLQKMRAQASEIAQKRQELTGTAK
KATLQPFDLRGLTVHTARMIRDWARLNARQIIQLAEENQVDLIVLESLRGFRPPGYENLDQEKKRRVAFFAHGRIRRKVT
EKAVERGMRVVTVPYLASSKVCAECRKKQKDNKQWEKNKKRGLFKCEGCGSQAQVDENAARVLGRVFWGEIELPTAIP

The query sequence (length=638) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6xmg:A 638 638 1.0000 1.0000 1.0000 0.0 6xmf:A
2 8i3q:A 595 638 0.9091 0.9748 0.9091 0.0
3 8i16:A 639 246 0.3527 0.3521 0.9146 5.73e-152
4 8i16:A 639 210 0.3166 0.3161 0.9619 5.89e-137
5 8i16:A 639 139 0.1630 0.1628 0.7482 4.04e-54
6 8j12:A 424 114 0.0486 0.0731 0.2719 3.69e-06 8dzj:A, 8dzj:B, 8j1j:A, 8j3r:A, 7wju:A, 7wju:B
7 8j1j:B 387 67 0.0329 0.0543 0.3134 8.93e-04 8j12:B, 8j3r:B
8 7l48:A 522 179 0.0690 0.0843 0.2458 0.006 7c7l:A, 7l48:B, 7l49:A, 7l49:B
9 7c7l:B 372 126 0.0502 0.0860 0.2540 0.017
10 6djv:C 615 162 0.0580 0.0602 0.2284 0.14 6dju:A, 6dju:B, 6dju:C, 6djv:A, 6djv:B
11 7odf:A 703 123 0.0502 0.0455 0.2602 0.15
12 8h1j:A 362 94 0.0455 0.0801 0.3085 1.1 8ex9:A, 8exa:A
13 6w6i:F 605 101 0.0439 0.0463 0.2772 1.4 6w6j:F
14 5elx:A 391 100 0.0345 0.0563 0.2200 2.4 3peu:A, 3pev:A, 3pew:A, 3pey:A, 3rrm:A, 3rrn:A
15 3fsr:A 352 50 0.0204 0.0369 0.2600 3.5 3fsr:C, 3ftn:A, 3ftn:B, 3ftn:C, 3ftn:D
16 7f3p:D 355 50 0.0204 0.0366 0.2600 3.6 1bxz:B, 1bxz:C, 7f3p:A, 7f3p:B, 7f3p:C, 2nvb:A, 2nvb:B, 2nvb:C, 2nvb:D, 6sdm:A, 6sdm:C, 6sdm:D, 7utc:A, 7utc:B, 7utc:C, 7utc:D, 7uut:A, 7uut:B, 7uut:C, 7uut:D, 7ux4:A, 7ux4:B, 7ux4:C, 7ux4:D, 7xy9:A, 7xy9:B, 7xy9:C, 7xy9:D, 1ykf:A, 1ykf:B, 1ykf:C, 1ykf:D
17 8hr5:A 466 115 0.0376 0.0515 0.2087 3.7
18 3fpc:A 352 56 0.0204 0.0369 0.2321 3.8 3fpc:B, 3fpc:C, 3fpc:D
19 5fg3:A 598 29 0.0188 0.0201 0.4138 5.9 5yt0:A
20 5kpr:A 359 65 0.0266 0.0474 0.2615 8.3 6b3v:A, 2i7p:A, 2i7p:C, 2i7p:B, 2i7p:D, 5kpt:A, 5kpz:A, 5kq8:A, 3mk6:A, 3mk6:C, 3mk6:B, 3mk6:D, 6pe6:A, 3sms:A, 7ue3:A, 7ue4:A, 7ue5:A, 7ue6:A, 7ue7:A, 7ue8:A, 7ueo:A, 7uep:A, 7ueq:A, 7uer:A, 7ues:A, 7uet:A, 7ueu:A, 7uev:A, 7uex:A, 7uey:A, 6x4j:A, 6x4k:A, 6x4l:A
21 1h21:A 240 47 0.0219 0.0583 0.2979 8.6 1h21:B, 1h21:C, 1h21:D
22 7n29:B 350 23 0.0188 0.0343 0.5217 9.1 7n29:A, 7n29:C, 7n29:D, 7r4j:A, 7r4k:A, 7r4l:A, 7r4m:A
23 4or9:A 399 55 0.0282 0.0451 0.3273 10.0 4ora:A, 4orc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218