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BioLiP
>protein
PRKARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQT

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8pna:A 67 60 1.0000 0.8955 1.0000 1.44e-39 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
2 3a01:A 78 59 0.5500 0.4231 0.5593 4.44e-19 3a01:E
3 2me6:A 71 57 0.5167 0.4366 0.5439 1.90e-17
4 1ig7:A 58 57 0.5000 0.5172 0.5263 1.59e-16
5 4rdu:D 62 57 0.4833 0.4677 0.5088 3.17e-16 4rdu:A, 4xrs:I, 4xrs:G
6 3rkq:A 58 56 0.5167 0.5345 0.5536 4.83e-15 3rkq:B
7 2h1k:B 60 58 0.4500 0.4500 0.4655 2.25e-14 2h1k:A
8 8eml:A 58 57 0.4667 0.4828 0.4912 7.92e-14 8eml:B
9 3a01:F 61 58 0.4167 0.4098 0.4310 1.19e-13 3a01:B, 3lnq:A
10 1jgg:A 57 55 0.4667 0.4912 0.5091 1.29e-13 1jgg:B
11 1fjl:A 65 58 0.4333 0.4000 0.4483 1.42e-13 1fjl:B, 1fjl:C
12 2r5z:A 75 55 0.4000 0.3200 0.4364 4.58e-13 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
13 3cmy:A 60 58 0.4167 0.4167 0.4310 4.74e-13
14 1b72:A 68 54 0.4667 0.4118 0.5185 5.61e-13
15 5flv:M 229 52 0.5000 0.1310 0.5769 5.85e-13 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
16 1nk2:P 77 57 0.4833 0.3766 0.5088 1.06e-12 1nk3:P
17 1ahd:P 68 58 0.3833 0.3382 0.3966 1.39e-12
18 6es3:K 72 53 0.3833 0.3194 0.4340 1.83e-12 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
19 4rbo:A 55 53 0.4833 0.5273 0.5472 2.55e-12 4rbo:D
20 2lkx:A 68 57 0.3833 0.3382 0.4035 6.45e-12
21 8osb:E 62 54 0.3833 0.3710 0.4259 5.29e-11
22 1zq3:P 68 60 0.4167 0.3676 0.4167 5.70e-11
23 4cyc:A 66 60 0.4000 0.3636 0.4000 6.84e-11 1b8i:A
24 1puf:A 77 57 0.4333 0.3377 0.4561 1.08e-10 2lp0:A
25 4uus:A 67 56 0.3667 0.3284 0.3929 2.78e-10 4uus:E
26 5eea:G 63 57 0.3667 0.3492 0.3860 8.64e-10 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
27 5zjr:A 64 54 0.4333 0.4062 0.4815 8.84e-10 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
28 6m3d:C 108 56 0.3667 0.2037 0.3929 1.72e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
29 6m3d:C 108 48 0.3333 0.1852 0.4167 9.29e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
30 2ld5:A 67 57 0.3667 0.3284 0.3860 2.86e-09
31 4qtr:C 57 56 0.3833 0.4035 0.4107 1.81e-08 4qtr:A, 4qtr:B, 4qtr:D
32 8ejo:A 56 54 0.3000 0.3214 0.3333 6.02e-08 8ejo:B, 8ejp:A, 8ejp:B
33 6e8c:A 135 54 0.3000 0.1333 0.3333 4.50e-07 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 52 0.2833 0.1259 0.3269 3.35e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 9b8u:B 66 50 0.3000 0.2727 0.3600 9.44e-07 9b8u:A, 9b8u:C, 9b8u:D
36 5wc9:A 136 56 0.3833 0.1691 0.4107 2.83e-05 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
37 8ik5:C 67 58 0.3167 0.2836 0.3276 6.00e-04 8ike:C, 8ilw:C
38 3d1n:I 150 56 0.3000 0.1200 0.3214 8.17e-04 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
39 1le8:A 53 42 0.2167 0.2453 0.3095 0.002 1akh:A, 1yrn:A
40 4egc:A 539 46 0.2667 0.0297 0.3478 0.002
41 1gt0:C 137 58 0.3833 0.1679 0.3966 0.004 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
42 7xrc:C 134 47 0.3000 0.1343 0.3830 0.012 2xsd:C
43 5hod:A 61 57 0.2833 0.2787 0.2982 0.016 5hod:D
44 1lfu:P 82 46 0.2333 0.1707 0.3043 0.044 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
45 8g8e:X 140 57 0.2833 0.1214 0.2982 0.19 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 3l1p:A 147 57 0.3000 0.1224 0.3158 0.21 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
47 8bx1:A 127 42 0.2500 0.1181 0.3571 0.97
48 6ly5:V 179 36 0.2167 0.0726 0.3611 1.7
49 8wwu:B 492 17 0.1500 0.0183 0.5294 2.0 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
50 1akh:B 78 56 0.2833 0.2179 0.3036 2.7 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
51 7o6y:a 124 37 0.2167 0.1048 0.3514 3.0
52 5yzg:D 1908 36 0.2333 0.0073 0.3889 3.8 6ahd:D, 8bc8:B, 8bc9:B, 8bca:B, 8bcb:B, 8bcc:B, 8bcd:B, 8bce:B, 8bcf:B, 8bcg:B, 8bch:B, 7bdi:B, 7bdj:B, 7bdk:B, 7bdl:B, 4f92:B, 4f93:B, 6ff7:r, 8h6k:5D, 8h6l:5D, 4kit:B, 5o9z:C, 7os1:B, 8qo9:B, 8qzs:B, 5urj:A, 5urk:A, 5urm:A, 5urm:B, 5xjc:D
53 1mnm:C 77 53 0.2667 0.2078 0.3019 5.0 1mnm:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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